Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g02393 | ATGGAGTTTTGGGGTGCCGAGGTTAAGGTTGGCGAATCTCTCAAGGTTGATCCACAACAATTTGAAGCTTGCATTCACCTTTCTCAGGCTGCACTTGGTGAAACTAAGAAAGACAAAGCCAATGAGCCTGTTTTTCTTTACTTGAAAGTTGGTGACCAGAAGTTTGTTTTTGGAACCCTTAACAGAGAGAAAATTCCTCAGACAACTCTTGATTTGGTTCTGGACAAGGAATTTGAGCTTTCTCACAGTTCCAAAACTTCTAGTGTCCATTTCTGTGGATACAAATCTTACTACCCTTATGATGATGTTGAGGGAGATGATTATTCTGATAGTGATGAGGAGGAAATTCCTTTGGCTCAACCCATAGAAAATGGGAAAACAGAAACAAAGGCTGAGGATCAGAAAGTTTCTGAAGCTAAGAAAGCTACTGCCAAGAGTGGTACACCTGCCAAGGCTGATCCACCTGCTAAGAGTGGTCCATCTGGAAAACAAGTGAAAGTTGTTGATCCAAAGGAGGAAAATGATGATGATTCTGATGATGAGTCTGATGATGATCTTGATAGCTCTGATGAAGAGATGGACGATGTTGATAGTGAAGATGAGGATGAGAGTGATGAAGAAGATGAAGAGACTCCTGTGAAGAAGGTGGACCAGGGGAAGAAGAGGGCTAATGAATCTGCATCTAAAACCCCTGTTCCTTCCAAGAAGTCAAAAAGTGCCACTCCTGAGAAAACTGATGGTAAGAAAGTTGTGCACACAGCAACCCCTCACCCCAAGAAAGGTGCAAAGACTCCAAGCACTGAAGCCAAATCTCCCAAGTCTGCAGGAAATCTCTCTTGCGGTAGCTGCAGCAAGACCTTCACCTCTGACAGTGCACTTAGTCAGCATAGCAAGGCCAAACATGGTGCTCAGTAA | 915 | 0.4361 | MEFWGAEVKVGESLKVDPQQFEACIHLSQAALGETKKDKANEPVFLYLKVGDQKFVFGTLNREKIPQTTLDLVLDKEFELSHSSKTSSVHFCGYKSYYPYDDVEGDDYSDSDEEEIPLAQPIENGKTETKAEDQKVSEAKKATAKSGTPAKADPPAKSGPSGKQVKVVDPKEENDDDSDDESDDDLDSSDEEMDDVDSEDEDESDEEDEETPVKKVDQGKKRANESASKTPVPSKKSKSATPEKTDGKKVVHTATPHPKKGAKTPSTEAKSPKSAGNLSCGSCSKTFTSDSALSQHSKAKHGAQ | 304 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g02393 | 304 | MobiDBLite | consensus disorder prediction | 126 | 140 | - | - | |
Vifa1g02393 | 304 | FunFam | Histone deacetylase HDT1 | 1 | 100 | - | - | |
Vifa1g02393 | 304 | MobiDBLite | consensus disorder prediction | 118 | 304 | - | - | |
Vifa1g02393 | 304 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 280 | 301 | IPR013087 | - | |
Vifa1g02393 | 304 | Gene3D | Nucleoplasmin core domain | 1 | 99 | - | - | |
Vifa1g02393 | 304 | MobiDBLite | consensus disorder prediction | 267 | 298 | - | - | |
Vifa1g02393 | 304 | MobiDBLite | consensus disorder prediction | 239 | 253 | - | - | |
Vifa1g02393 | 304 | MobiDBLite | consensus disorder prediction | 173 | 210 | - | - | |
Vifa1g02393 | 304 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 278 | 304 | IPR013087 | - | |
Vifa1g02393 | 304 | Pfam | Nucleoplasmin-like domain | 3 | 94 | IPR041232 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g02393 | Vifa-Chr1 | 385401643 | 385403928 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g02393 | 1 | 303 | C2H2 Transcription Factor Family | AT5G03740 | 35.119 | 2.22e-43 | 149 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vifa1g02393 | NPL | 2.3e-14 | CL0055 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g02393 | - | - | gmx:100792094 | 330.487 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa1g02393 | 1 | 385401643 | 385403928 | Vifa1g02393 | 1 | 385401643 | 385403928 | ECH |