Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02393 ATGGAGTTTTGGGGTGCCGAGGTTAAGGTTGGCGAATCTCTCAAGGTTGATCCACAACAATTTGAAGCTTGCATTCACCTTTCTCAGGCTGCACTTGGTGAAACTAAGAAAGACAAAGCCAATGAGCCTGTTTTTCTTTACTTGAAAGTTGGTGACCAGAAGTTTGTTTTTGGAACCCTTAACAGAGAGAAAATTCCTCAGACAACTCTTGATTTGGTTCTGGACAAGGAATTTGAGCTTTCTCACAGTTCCAAAACTTCTAGTGTCCATTTCTGTGGATACAAATCTTACTACCCTTATGATGATGTTGAGGGAGATGATTATTCTGATAGTGATGAGGAGGAAATTCCTTTGGCTCAACCCATAGAAAATGGGAAAACAGAAACAAAGGCTGAGGATCAGAAAGTTTCTGAAGCTAAGAAAGCTACTGCCAAGAGTGGTACACCTGCCAAGGCTGATCCACCTGCTAAGAGTGGTCCATCTGGAAAACAAGTGAAAGTTGTTGATCCAAAGGAGGAAAATGATGATGATTCTGATGATGAGTCTGATGATGATCTTGATAGCTCTGATGAAGAGATGGACGATGTTGATAGTGAAGATGAGGATGAGAGTGATGAAGAAGATGAAGAGACTCCTGTGAAGAAGGTGGACCAGGGGAAGAAGAGGGCTAATGAATCTGCATCTAAAACCCCTGTTCCTTCCAAGAAGTCAAAAAGTGCCACTCCTGAGAAAACTGATGGTAAGAAAGTTGTGCACACAGCAACCCCTCACCCCAAGAAAGGTGCAAAGACTCCAAGCACTGAAGCCAAATCTCCCAAGTCTGCAGGAAATCTCTCTTGCGGTAGCTGCAGCAAGACCTTCACCTCTGACAGTGCACTTAGTCAGCATAGCAAGGCCAAACATGGTGCTCAGTAA 915 0.4361 MEFWGAEVKVGESLKVDPQQFEACIHLSQAALGETKKDKANEPVFLYLKVGDQKFVFGTLNREKIPQTTLDLVLDKEFELSHSSKTSSVHFCGYKSYYPYDDVEGDDYSDSDEEEIPLAQPIENGKTETKAEDQKVSEAKKATAKSGTPAKADPPAKSGPSGKQVKVVDPKEENDDDSDDESDDDLDSSDEEMDDVDSEDEDESDEEDEETPVKKVDQGKKRANESASKTPVPSKKSKSATPEKTDGKKVVHTATPHPKKGAKTPSTEAKSPKSAGNLSCGSCSKTFTSDSALSQHSKAKHGAQ 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02393 304 MobiDBLite consensus disorder prediction 126 140 - -
Vifa1g02393 304 FunFam Histone deacetylase HDT1 1 100 - -
Vifa1g02393 304 MobiDBLite consensus disorder prediction 118 304 - -
Vifa1g02393 304 ProSitePatterns Zinc finger C2H2 type domain signature. 280 301 IPR013087 -
Vifa1g02393 304 Gene3D Nucleoplasmin core domain 1 99 - -
Vifa1g02393 304 MobiDBLite consensus disorder prediction 267 298 - -
Vifa1g02393 304 MobiDBLite consensus disorder prediction 239 253 - -
Vifa1g02393 304 MobiDBLite consensus disorder prediction 173 210 - -
Vifa1g02393 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 278 304 IPR013087 -
Vifa1g02393 304 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02393 Vifa-Chr1 385401643 385403928 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02393 1 303 C2H2 Transcription Factor Family AT5G03740 35.119 2.22e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa1g02393 NPL 2.3e-14 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02393 - - gmx:100792094 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02393 1 385401643 385403928 Vifa1g02393 1 385401643 385403928 ECH