Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02374 ATGAACGAGAAAGCCAACGTTTCTAAGGAGCTCAACGCCAAGCACAAAAGGATACTAGAAGAACTTCTTAAATTACCAGAGAATAGGGAGTGTGTTGACTGCAAAGCTAAAGGACCAAGATGGGCTAGTGTCAATCTTGGCATCTTTATTTGCATGCAGTGTTCAGGAATACATCGAAGTCTTGGGGTACATATTTCAAAGGTTCGCTCTGCTACTTTAGACACTTGTCTCCCAGAGCAGGTTGCATTTATTCAATCTATGGGAAATGAGAAAGCAAATAGTTATTGGGAAGCAGAATTACCTCCAAATTATGACAAAGTTGGTATTGAAAACTTCATCCGTGCAAAGTATGAAGACAAGAGATGGGTTGCAAGGGACACTAAGCCAAAATCACCTTCTAGACTGTTCATCCATTTCACCCAATTTCTGCACGACGATTTTCAACAACAGCTTGCACTTCCTAAAACATTTTCTGACAATTTAAAGAAGAAATTGCCAGAAAATGTGGTCCTTAAAGGTCCTAGTGGAGTTGTGTGGAATATAGGGCTGGTAATTAGAGATGATTTTGTTTACTTTGTGAACGGTTGGGAACGATTTGTGAAGGATCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGTGAATCACTCTTTGAGGTTTTAGTCTTTGATGGAAACAGTTTCTGTGAGAAGGCAGCTTCTTATTTTGTTGGAAAATGCGGACCTGCTCAAACTGAACAAGGTGGTAGCAAGGCAAAGGACAACAGCAATTCTGTTGAAGAAGTCAACATTGCTTCTAATGGGGGTGTTACTGTTGAGTGTGGTTCATCTGAGAAACTTCGGCATCTTAAGAAAGTAGGAGCACCATTAGTTGTACCTTTTGAAACTGCCAACGGAAAGACTTCCAATGCTGGCGTAAGAACTGATTCCCCTGAGCTGTTCGCGGCGGATGCAGCCACTAAGACCACACCTGTAGTAGTTCCCTTCCAATCAGCTGGAAAAAGGCCCAAGAAGCCTGTTAATGAAGTTACGCCTGTCGTCCATACTAAGAAGCGAGGAAGACCACCTAAAGTAGATAGTTCTTCCGAGACAATACGTGATTTGGTGGCTTATAGCAGGGAACACTCAGGGTTGTCCTGTACAGGAGCAGAGAACAACATACCAATAGATCCTCAGTACTATCTTGAGAATCAAATTAGCAAGCCAATTCTAAGAATTTTTGAGCCAATTCTAAAGAATGCCAGCAAGGAACTTCTCCATGGAAGTCACACGAGATCTATTTCTATTTCTACTCCGTATAACAGCGGTATAATGAAATTTGCTGAGAAACAGTTTACTTGCATTGGTTGCAAAGCTTTACTTAGCAATGAAGACCGCACTCTCTGCTCTCATTGCAAAGGAAGGGAAGCTGAATTGTACTGTAAAACTGTAGCTCAAGTGTCGGATCTTGAGATACTTTTTGGGAGGTTATGGACACAGTGTCAGGAGTGCCAAGGTTCACTACATCAGGATGTTCTCTGCACAAGTCGAGATTGTCCAATTTTTTTATCGACGCAAGAAGGCACAGAAATACATGGCTGA 1590 0.4157 MNEKANVSKELNAKHKRILEELLKLPENRECVDCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTCLPEQVAFIQSMGNEKANSYWEAELPPNYDKVGIENFIRAKYEDKRWVARDTKPKSPSRLFIHFTQFLHDDFQQQLALPKTFSDNLKKKLPENVVLKGPSGVVWNIGLVIRDDFVYFVNGWERFVKDHSLKENDFLVFKYNGESLFEVLVFDGNSFCEKAASYFVGKCGPAQTEQGGSKAKDNSNSVEEVNIASNGGVTVECGSSEKLRHLKKVGAPLVVPFETANGKTSNAGVRTDSPELFAADAATKTTPVVVPFQSAGKRPKKPVNEVTPVVHTKKRGRPPKVDSSSETIRDLVAYSREHSGLSCTGAENNIPIDPQYYLENQISKPILRIFEPILKNASKELLHGSHTRSISISTPYNSGIMKFAEKQFTCIGCKALLSNEDRTLCSHCKGREAELYCKTVAQVSDLEILFGRLWTQCQECQGSLHQDVLCTSRDCPIFLSTQEGTEIHG 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02374 529 CDD ArfGap 19 117 - -
Vifa1g02374 529 CDD B3_DNA 138 227 IPR003340 GO:0003677
Vifa1g02374 529 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Vifa1g02374 529 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 135 IPR044520 GO:0005096
Vifa1g02374 529 Gene3D - 135 232 IPR015300 -
Vifa1g02374 529 SUPERFAMILY DNA-binding pseudobarrel domain 137 229 IPR015300 -
Vifa1g02374 529 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Vifa1g02374 529 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Vifa1g02374 529 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Vifa1g02374 529 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Vifa1g02374 529 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Vifa1g02374 529 Pfam C4-type zinc-finger of DNA polymerase delta 450 518 IPR025687 -
Vifa1g02374 529 SMART B3_2 136 229 IPR003340 GO:0003677
Vifa1g02374 529 Gene3D - 373 423 IPR042087 -
Vifa1g02374 529 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Vifa1g02374 529 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Vifa1g02374 529 Pfam B3 DNA binding domain 145 227 IPR003340 GO:0003677
Vifa1g02374 529 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Vifa1g02374 529 ProSiteProfiles B3 DNA-binding domain profile. 136 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02374 Vifa-Chr1 382413058 382414833 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02374 387 518 Core DNA Replication Machinery Family AT5G63960 81.818 6.36e-69 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa1g02374 ArfGap 4.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02374 K12486 K02327 psat:127093533 436.417