Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02372 ATGAACGAGAAAGCCAACGTTTCTAAGGAGCTCAACGCCAAGCACAAAAGGATACTAGAAGGACTTCTTAAATTACCAGAGAATAGGGAGTGTGCTGACTGCAAAGCTAAAGGACCAAGATGGGCTAGTGTCAATCTTGGCATCTTTATTTGCATGCAGTGTTCAGGAATACATCGAAGCCTTGGGGTACATATTTCAAAGGTTCGCTCTGCTACTTTAGACACTTGTCTCCCAGAGCAGGTTGCATTTATTCAATCTATGGGAAATGAGAAAGCAAATAGTTATTGGGAAGCAGAATTACCTCCAAATTATGACAGAGTTGGTATTGAAAACTTCATCCGTGCAAAGTATGAAGACAAGAGATGGGTTGCAAGGGACACTAAGCCAAAATCACCTTCTAGACTGTTCATCCATTTCACCCAATTTCCGCACGACGATTTTCAACAACAGCTTGCACTTCCTAAAACATTTTCTGACAATTTAAAGAAGAAATTTCCAGAAAATGTGGTCCTTAAAGGTCCTAGTGGAGTTGTGTGGAATATAGGGCTGGTAATTAGAGATGATTCTGTTTACTTTGTGAACGGTTGGGAACGATTTGTGAAGGATCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGTGAATCACTCTTTGAGGTTTTAGTCTTTGATGGAAACAGTTTCTGTGAGAAGGAAGCTTCTTATTTTGTTGGAAAATGCGGACCTGCTCAAACTGAACAAGGTGGTAGCAAGGAAAAGGACAATAGCAATTCTGTTGAAGAAGTAAATACTGCTTCTAATGGGGGTGTTACTGTTGAGTGTGGTTCATCTGAGAAACTTCGGCATCTTAAGAAAGTAGGAGCACCATTAGTTGTACCTTTTGAAGCTGCCAACGGAAAGACTTCCAATGCTGGCGTAAGAACTGATTCCCCTGAGCTGTTCGCGGCGGATGCAGCAACTGAGACCACACCTGTAGTAGTTCCCTTCCAATCAGCTGGAAAAAGGCCCAAGAAGCCTGTTAATGAAGTTACGCCTGTCGTCCATACTAAGAAGCGAGGAAGACCACCTAAAGTAGATAGTTCTTCCGAGACAATACGTGATTTGGTGGCTTATAGCAGGGAACACTCAGGGTTGTCCTGTACAGGAGCAGAGAACAACATACCAATAGATCCTCAGTACTATCTTGAGAATCAAATTAGCAAGCCAATTCTAAGAATTTTTGAGCCAATTCTAAAGAATGCCAGCAAGGAACTTCTCCATGGAAGTCACACGAGATCTATTTCTATTTCTACTCCGTCTAACAGCGGTATAATGAAATTTGCCAAGAAACAGTTTACTTGCATTGGTTGCAAAGCTTTACTTAGCAATGGAGACCGCACTCTCTGCTCTCATTGCAAAGGAAGGGAAGCTGAACGGTACTATAAAACTGTAGCTCAAGTGTCGGATCTTGAGATACTTTTTGGGAGGTTGTGGACACAGTGTCAGGAGTGCCAAGGTTCACTTCATCAGGATGTTCTCTGCACAAGTCGAGATTGTCCAATTTTTTTATCGACGCAAGAAGGCACAGGAAGACATGGCTGA 1590 0.4208 MNEKANVSKELNAKHKRILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTCLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEDKRWVARDTKPKSPSRLFIHFTQFPHDDFQQQLALPKTFSDNLKKKFPENVVLKGPSGVVWNIGLVIRDDSVYFVNGWERFVKDHSLKENDFLVFKYNGESLFEVLVFDGNSFCEKEASYFVGKCGPAQTEQGGSKEKDNSNSVEEVNTASNGGVTVECGSSEKLRHLKKVGAPLVVPFEAANGKTSNAGVRTDSPELFAADAATETTPVVVPFQSAGKRPKKPVNEVTPVVHTKKRGRPPKVDSSSETIRDLVAYSREHSGLSCTGAENNIPIDPQYYLENQISKPILRIFEPILKNASKELLHGSHTRSISISTPSNSGIMKFAKKQFTCIGCKALLSNGDRTLCSHCKGREAERYYKTVAQVSDLEILFGRLWTQCQECQGSLHQDVLCTSRDCPIFLSTQEGTGRHG 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02372 529 CDD ArfGap 19 117 - -
Vifa1g02372 529 Pfam B3 DNA binding domain 142 227 IPR003340 GO:0003677
Vifa1g02372 529 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Vifa1g02372 529 CDD B3_DNA 144 227 IPR003340 GO:0003677
Vifa1g02372 529 SUPERFAMILY DNA-binding pseudobarrel domain 138 229 IPR015300 -
Vifa1g02372 529 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 135 IPR044520 GO:0005096
Vifa1g02372 529 MobiDBLite consensus disorder prediction 246 273 - -
Vifa1g02372 529 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Vifa1g02372 529 Gene3D - 373 423 IPR042087 -
Vifa1g02372 529 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Vifa1g02372 529 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Vifa1g02372 529 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Vifa1g02372 529 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Vifa1g02372 529 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Vifa1g02372 529 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Vifa1g02372 529 Gene3D - 133 232 IPR015300 -
Vifa1g02372 529 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Vifa1g02372 529 SMART B3_2 136 229 IPR003340 GO:0003677
Vifa1g02372 529 Pfam C4-type zinc-finger of DNA polymerase delta 450 518 IPR025687 -
Vifa1g02372 529 ProSiteProfiles B3 DNA-binding domain profile. 136 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02372 Vifa-Chr1 382397403 382399178 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02372 387 518 Core DNA Replication Machinery Family AT5G63960 82.576 4.70e-69 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa1g02372 ArfGap 5.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02372 K12486 - psat:127093533 429.483