Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02370 ATGTCCAGAGAAAGGGGGAGATTTTTTGATGAGATAGGAAAGAAGAAAGAAGGAGATGATACTTTTCAAAAGGGAAGAATGTTAGGTTCTTCTGGAACCCTAAATACAACTACTCCTTGTGCTGCATGTAAGCTTTTGAGAAGAAGGTGTGCACAAGAATGCCCTTTTTCTCCATATTTTTCTCCTCATGAGCCTCAAAAGTTTGCTTCTGTTCATAAAGTCTTTGGTGCCAGCAATGTCTCAAAGCTGTTATTGGAGGTACCAGAGAATCAAAGAGCGGATGCAGCAAATAGTTTAGTTTATGAAGCAAATGTAAGACTAAGAGATCCAGTTTATGGATGCATGGGTGCAATTTCATCTTTGCAACAACAAGTTCAATCATTACTTGGTGAACTTAATGCTATAAGGGAAGAAATACATAAATACAAACTCATGGAAGCTAACATGCTTCCTTCTTCACAAGATGTGTCAATTGCTACCATGCCAACTTCATCAACATTTCCTATGCTACCTTCTTCTATTTACTCACAACAGGAGAATCATCCTTCCAATTATAGCTCAATTTCAAGTGATCATATATCTTATTTTGATTAA 594 0.3687 MSRERGRFFDEIGKKKEGDDTFQKGRMLGSSGTLNTTTPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKLLLEVPENQRADAANSLVYEANVRLRDPVYGCMGAISSLQQQVQSLLGELNAIREEIHKYKLMEANMLPSSQDVSIATMPTSSTFPMLPSSIYSQQENHPSNYSSISSDHISYFD 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02370 197 Coils Coil 118 138 - -
Vifa1g02370 197 MobiDBLite consensus disorder prediction 178 197 - -
Vifa1g02370 197 Pfam Lateral organ boundaries (LOB) domain 39 135 IPR004883 -
Vifa1g02370 197 ProSiteProfiles LOB domain profile. 38 139 IPR004883 -
Vifa1g02370 197 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 35 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02370 Vifa-Chr1 382129677 382130522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02370 27 157 AS2 family AT2G40470 79.104 7.98e-67 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa1g02370 LOB 2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02370 - - gmx:100786324 251.906