Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02368 ATGAATAAAAGTTTCCTTAGTTTCGTCTTTCTTTTGCTCTTTGCAATCTTTTTCTTTTCCACCTTAGCTTTTGGAGCCACTCTCTCAAAAGATGAAGTGGAAGCTCTCAGAGATATTGCTAAGACACTTGGAAAGAAGAATTGGGATTTCAGTGTAGATCCATGTAGTGGAGGAAAAAATTGGACTTCTTCTGTTCAAGTGAAAGGAAGTGAAAATGCTGTCATATGCAATTGTACCTATGTCAATGCCACTGTTTGTCATGTGACTAACATACTTTTGAAAAGTCAAAATCTCCCAGGCACTCTTCCATCAGAATTGGTCAGGTTGCCTTATCTTCAAGAATTTGACGTTTCCCGCAATTATTTGAACGGTACAATTCCTAAAGAATGGGGGTCCATGAATCTCATTAACATCACTCTCCTTGGAAATCGATTAACTGGTTCAATACCAACAGCTATAACAAACATATCCACTCTACAAAGTTTGGTATTAGAATCCAATCAATTTTCTGGAAATCTTCCTCCTGGACTTGACAAACTTACCCAAATTCAAAGATTGTTACTCTCTTCCAACAATTTCAATGGAGAATTACCTGCTACATTGGCCAAACTCACCACATTAGAAGACATTCGACTCGGAGACAATCAATTCACTGGAAAGATACCCGATTTTATTCGAAGCTGGACAAGCCTCAAGAAACTAGTGATTGAAGGAAGTGGATTAAGCGGGCCAATTCCTTCTGGAATTTCGGTTTTGGAAAAATTAACTGACTTGAGAATCAGTGATTTAAATGGATTTGAACATTCACTTTTTCCGGAACTTAGTAACATGACATTGAAAACATTGATTCTAAGGAATTGCAACATCAATGGGACACTACCTCAGTATCTTGGGTCAATGACTAGTCTAAAAAACTTAGATCTTAGCTTTAACAAATTGAGTGGACCAATTCCAAATAACTATGATCCCCTAAGAAAAGTTGATTACATATATTTAACTGGAAACCTTCTCACTGGACCAGTTCCTTCATGGACACAGAAAGCTGACAACATAGATATTTCATACAATAACTTCAGCCAAAACCAAGGGACTCAGACATGTCAAGATGGAAATGTGAACTTGTTTTCTAGTTCTTCGACCCGCAATGACTCAGGAAAGGTTTCTTGTTTGACAAGCTTTGTCTGTCCTAAAACATCGTATGCTCTACATATAAACTGTGGTGGAAAGCCAGTAACGGTCAATGGAAGCTCATATGATGATGATGGAGATGCAGCAGGACCAGCTAGATTCCACCAGAGTGGAACAAAAAATTGGGCATTTAGCACCACGGGTAACTTCATGGATAATGACGGTGGAGACTATTATACATGGTCGAATAAATCTGCGCTTTCTATGGCCAATGCTGAACTTTTCATGACTGCACGAGTTTCTCCCACGTCTTTGACTTATTACGGATTTTGCCTGGCAAATGGAAACTACACAGTTAATCTACATTTTGCCGAAATCATGTTTACCGATGATCAAACATATAACAGCCTAGGAAGACGTGTTTTCGATATCTATATTCAGGGAAATTTGGTGCAAAAGGACTTTGATATTGCAAAAAAAGCAGGAGGAATTGGTAAGGCAGTAACAATACCATTTACTGCTGTTGTGGTGAATAGTACTTTGGAGATTCGCTTATATTGGGCTGGAAAAGGGACAACTAGTATACCCTTTAGATCAGTTTATGGTCCTCTTATATCAGCTATATCTGTTGAATCCGATTTTCCACCTCCTCCTGAAAACGGAAGCAGCAGCATATCTACAGGAGCTGTGGTTGGAATTGTGGCGGCAGTAGCCATTGTTATCATTCTATTAGTTTGTATACTTCGGTGGAAAGGCTGTTTTGGAAAGAAAAGCTCTTTAGAAAAAGAGGTGAAGGGTTTAGACCTACAAATGAGTTTATTTAACCTAAGACAGATCAAAGGAGCAACAAATAACTTTGATATTTCCAATAAAATTGGAGAAGGAGGATTTGGTCCAGTATACAAGGGATGTCTATCAGATGGAACATTGATAGCACACCCTAATCTTGTTAAACTCTATGGATGTTGTGTGGAGGGAGATCAATTAATGCTAATATATGAATATTTGGAAAATAATAGTCTTGCCCGCGCTTTATTTGGGACTCCAGAACAGCAAATAAGATTGGATTGGCCAACAAGATACAAGATTTGTGTTGGTATTGCTAGAGGTTTAGCATATCTACATGAAGAATCAAGATTGAAAGTTGTTCATAGAGACATCAAAGCAACTAATGTGTTGCTTGATAAAGATTTGATTCCGAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAAGAAGAGAACACTCACATCAGCACTCGAATAGCTGGGACATATGGATATATGGCTCCAGAATATGCCATGCATGGTTATTTGACCGATAAAGCAGATGTTTATAGTTTTGGAATCGTCGCATTGGAAATCTTACACGGCAGTAACAATACCACTCTTCGACAAAAAGAAGAAGCATTCCATCTTCTTGATTGGGCACATATCTTGAAAGAAGAAGGTAACTTACTAGAGCTAGTTGATAAAAGACTGGGTTCAAATTTCAAGAAAGATGAAGCAATATTGATGATAAATGTGGCACTCTTATGCACTAATGTGACTTCATCCCTAAGGCCTGCAATGTCTTCAGTGGTAAGCATGCTAGAAGGTAGAATTGAAATTCAAGAACTGGTTTTAGAGTCAAATGAGGTATTGGACGAGAAGAAAATGGAAGCAATGCGAAAATATTATCAAGATCATAGTATATCAATGGAAGGGCCATGGACTGCTACAACTTCTTCTTCAGTAGCCACTGATCTTTATCCTGTACAACTAGATAGTTCTTACTTGGAGAAAAGAGTTTGA 2922 0.3809 MNKSFLSFVFLLLFAIFFFSTLAFGATLSKDEVEALRDIAKTLGKKNWDFSVDPCSGGKNWTSSVQVKGSENAVICNCTYVNATVCHVTNILLKSQNLPGTLPSELVRLPYLQEFDVSRNYLNGTIPKEWGSMNLINITLLGNRLTGSIPTAITNISTLQSLVLESNQFSGNLPPGLDKLTQIQRLLLSSNNFNGELPATLAKLTTLEDIRLGDNQFTGKIPDFIRSWTSLKKLVIEGSGLSGPIPSGISVLEKLTDLRISDLNGFEHSLFPELSNMTLKTLILRNCNINGTLPQYLGSMTSLKNLDLSFNKLSGPIPNNYDPLRKVDYIYLTGNLLTGPVPSWTQKADNIDISYNNFSQNQGTQTCQDGNVNLFSSSSTRNDSGKVSCLTSFVCPKTSYALHINCGGKPVTVNGSSYDDDGDAAGPARFHQSGTKNWAFSTTGNFMDNDGGDYYTWSNKSALSMANAELFMTARVSPTSLTYYGFCLANGNYTVNLHFAEIMFTDDQTYNSLGRRVFDIYIQGNLVQKDFDIAKKAGGIGKAVTIPFTAVVVNSTLEIRLYWAGKGTTSIPFRSVYGPLISAISVESDFPPPPENGSSSISTGAVVGIVAAVAIVIILLVCILRWKGCFGKKSSLEKEVKGLDLQMSLFNLRQIKGATNNFDISNKIGEGGFGPVYKGCLSDGTLIAHPNLVKLYGCCVEGDQLMLIYEYLENNSLARALFGTPEQQIRLDWPTRYKICVGIARGLAYLHEESRLKVVHRDIKATNVLLDKDLIPKISDFGLAKLDEEENTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEILHGSNNTTLRQKEEAFHLLDWAHILKEEGNLLELVDKRLGSNFKKDEAILMINVALLCTNVTSSLRPAMSSVVSMLEGRIEIQELVLESNEVLDEKKMEAMRKYYQDHSISMEGPWTATTSSSVATDLYPVQLDSSYLEKRV 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02368 973 Gene3D Ribonuclease Inhibitor 275 396 IPR032675 -
Vifa1g02368 973 Gene3D Ribonuclease Inhibitor 31 197 IPR032675 -
Vifa1g02368 973 Gene3D Ribonuclease Inhibitor 198 274 IPR032675 -
Vifa1g02368 973 Gene3D - 397 589 - -
Vifa1g02368 973 SMART serkin_6 662 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02368 973 Pfam Protein tyrosine and serine/threonine kinase 687 852 IPR001245 GO:0004672|GO:0006468
Vifa1g02368 973 Gene3D Phosphorylase Kinase; domain 1 687 713 - -
Vifa1g02368 973 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 13 937 - -
Vifa1g02368 973 ProSiteProfiles Protein kinase domain profile. 619 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02368 973 Gene3D Transferase(Phosphotransferase) domain 1 714 922 - -
Vifa1g02368 973 ProSitePatterns Serine/Threonine protein kinases active-site signature. 758 770 IPR008271 GO:0004672|GO:0006468
Vifa1g02368 973 Pfam Malectin domain 401 584 IPR021720 -
Vifa1g02368 973 Pfam Leucine rich repeat 278 337 IPR001611 GO:0005515
Vifa1g02368 973 FunFam Leucine-rich repeat transmembrane protein kinase 200 402 - -
Vifa1g02368 973 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 399 589 - -
Vifa1g02368 973 FunFam Putative LRR receptor-like serine/threonine-protein kinase 712 919 - -
Vifa1g02368 973 Gene3D Phosphorylase Kinase; domain 1 629 686 - -
Vifa1g02368 973 SUPERFAMILY L domain-like 82 359 - -
Vifa1g02368 973 SUPERFAMILY Protein kinase-like (PK-like) 646 916 IPR011009 -
Vifa1g02368 973 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 32 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02368 Vifa-Chr1 381810469 381817417 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02368 22 958 Receptor kinase-like Gene Family AT1G53420 53.846 0.0 975
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g02368 PK_Tyr_Ser-Thr 1.2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02368 - - gmx:732563 1441.02