Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02359 ATGGTTTCTAGGGAGCAAAAGAGAGCAGCACTGCATGAGAAGCTGCAACTTCTTCGTTCTGTTACTAACTCTCATGCTCTAAGCGATACTTCGATTGTAATCGATGCATCAAAGTATATCGAAAATCTAAAGGAAAAGGTTGATAGACTAAATGAAGAAATAGCTTCTGCAGAAAGTTCAAGTGTTCATAATCCTTTGCCTATGATTACGGTGGAAACCCTAGAAAAAGGCTTTCTGATAAATGTTTTTTCAGCAAAAAGCAGCCAAGGTATGCTTGTTTCAATACTTGAAGCCATTGAAGAGATGAGACTCACAGTTCTGGAAGCTAGGGTTTCTTGTACAGACAATTTTCGATTCCAAGCTGTTGGAGGAGAGAATGAAGAAGAAGGTGAAACCATTGATGCACAAGCTGTGAAACAAGCTGTAGGACAAGCAATAAAAAATTGGAGTGAAAGTACTGATCAAGTGTAA 471 0.3864 MVSREQKRAALHEKLQLLRSVTNSHALSDTSIVIDASKYIENLKEKVDRLNEEIASAESSSVHNPLPMITVETLEKGFLINVFSAKSSQGMLVSILEAIEEMRLTVLEARVSCTDNFRFQAVGGENEEEGETIDAQAVKQAVGQAIKNWSESTDQV 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02359 156 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 151 - -
Vifa1g02359 156 Coils Coil 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02359 Vifa-Chr1 380084292 380085699 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02359 11 142 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 28.472 4.32e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02359 - - tpra:123919440 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01276 5 369684465 369687019 Vifa1g02359 1 380084292 380085699 ECH
Vifa1g02359 1 380084292 380085699 Vifa1g02359 1 380084292 380085699 ECH