Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02339 ATGCCAGTGAGGCAGATGAAAGAAAGCTCAGAACAACACATTGTGATCAAAACCAGTTTACAGAACTCTAAGAATGCTCCAGCACCAGCACCAGCACCATCTTCAGAACTAAACCATAAACAAGCTTCACTTCAACCAAGGAACAAAGGAAGAAGAAGAGGAAGAGGTGGTATAAAATCTGATCAAGTAGAGATTTTGATGAGAACAAGTACTTCTTCCAATGGAAATGTTGGTTTTCCTACTTCAAGCAAGTCTTTGAACTTTGCTACTAGGCCTGGATTTGGAACAGTTGGGACAAAATGCATTGTGAAGGCTAATCACTTCTTTGCAGAGTTACCTGACAAGGACTTAAACCAATATGATGTTACTATTACTCCTGAGGTGTCTTCAAGAACAGTAAACAGGTCCATTATTGCTGAGCTTGTGAGATTGTACAAAGAGTCTGACTTAGGGATGAGGCTTCCAGCTTATGATGGCAGAAAAAGTCTGTACACTGCAGGACAACTTCCCTTTTCTTGGAAAGATTTTATGATTAAGCTTGTAGATGAAGAGGATGGAGTTAATTGCCCCAAAAGGGTTAAAGAGTACAGGGTGGTCATTAAGTTTGTTGCTAAAGCAAATTTGCATCATTTGGGGAAGTTTCTAGCCGGTAAGCGAGCCGATGCGCCACAGGAGGCACTTCAAATTCTTGATATTGTACTAAGGGAGCTATCAACTAAGAGGTATTGTCCCATTGGGAGGTCATTCTTTTCGCCCGATATAAGAAAACCACAACGGCTCGGAGAGGGGTTGGAGTCATGGTGTGGATTTTACCAGAGCATAAGGCCTACTCAGATGGGCCTTTCCCTCAATATAGATATGGCGTCTGCAGCATTCATCGAGCCTCTTCCAGTTGTAGAATTTGTTGGGCAGCTATTAGGGAAGGATGTGCTGTCAAGGCCTTTGTCAGATGCCGATCGCATCAAGGTTAAGAAAGGTCTTAGAGGAGTTAAGGTTGAAGTAACACATAGAGGAAGTGTAAGAAGAAAATACCGTGTTTCGGGGATAACTTCTCAACCAACAAGAGAACTTGTGTTTCCCGTTGATGAGAATTCAACTATGAAGTCGGTAGTCGAATACTTTCAAGAGATGTATGGTTTCACTATTCAATATACTCATCTTCCTTGCCTTCAAGTAGGCAACCAAAAGAAGGCTAACTACTTACCTATGGAGGCATGCAAAATTGTCGAAGGTCAACGTTATACAAAAAGATTAAACGAGAAACAAATTACTTCTCTTTTGAAAGTTACTTGCCAGAGACCTCGCGATCGGGAAAATGACATTTTACAGACCGTTCAACATAATGCTTATGACCAAGATCCTTATGCAAAAGAATTTGGAATTAACATCAGTGAGAAGCCAGCGTCTGTTGAAGCACGAATTCTTCCTGCCCCTTGGCTTAAATATCACGAAAGTGGGAAAGAAAAGAACTGTTTACCTCATGTTGGTCAGTGGAATATGATGAATAAGAAAATGATTAATGGAATGACGGTTAACCGGTGGGCTTGCATAAATTTCTCAAGGGGCTTGCAAGATAGTGTTGCTCGCACTTTTTGTAATGATCTCGCTCATATGTGTCAAATATCTGGCATGGAGTTTAATCTGGAACCTGTTATCCCCATCTACAATGCAAAGCCTGAGCAAGTGGAGAAAGCTTTGAAGCATGTTTATCAAGTGTCGACAAACAAAACTAAAGGAAAGGAATTGGAGCTTTTGTTAGTAATATTGCCAGACAATAATGGTTCTCTTTATGGTGATCTTAAGCGTATTTGCGAAACAGACCTCGGTATAATTTCACAGTGCTGCCTAACAAAGCATGTCTTCAAAATCACCAAACAGTATTTGGCTAACGTGTCGCTAAAGATAAATGTGAAGATGGGAGGTAGAAACACTGTTCTTTTAGATGCTGTGAGCTACAGAATACCATTAGTTAGCGACATACCAACCATAATTTTTGGAGCTGATGTTACGCACCCTGAAAACGGAGAAGACACTAGTCCTTCAATAGCAGCTGTTGTAGCATCCCAAGATTGGCCCGAAGTGACAAAATATGCTGGCTTAGTGTGTGCTCAAGCTCACAGGCAGGAACTTATACAAGATTTATACAAAACATGGCATGATCCTGTTCGCGGCACTGTTAGTGGCGGCATGATAAGAGATTTACTGATTTCTTATAGAAAAGCCACGGGACAAAAGCCTCTACGAATCATATTTTACAGGGATGGTGTAAGTGAAGGACAATTTTACCAAGTTTTACTTTATGAGTTGGATGCAATCCGGAAGGCGTGTGCTTCCTTAGAACCAAACTATCAACCTCCAGTAACTTTCGTCATTGTACAGAAACGACACCATACTCGGTTATTTCCAAACAACCATAGGGACAGGAGTAGCACTGATAAGAGTGGAAATATATTGCCTGGGACTGTTGTCGACACCAAAATTTGTCATCCGACAGAATTTGATTTTTATCTCTGCAGTCACGCCGGCATCCAGGGTACTAGTCGCCCAGCTCATTATCATGTTTTATGGGACGAAAACAATTTCACAGCAGATGGAATTCAATCTTTGACAAACAATCTTTGTTATACTTATGCTAGGTGCACACGATCCGTATCCATTGTTCCTCCAGCATACTATGCACATTTAGCCGCCTTTAGAGCACGATTCTATATGGAACCAGAGATGCAAGAGAATGGCTCTACAGCTGATGGTGGCAATTCTAGCCATAGTTCCAAGGGAACAACAACAAGAGCAGTTGGAGAATGTGGTGTGAAGCCATTACCAGCTCTGAAAGATAATGTCAAGAGAGTGATGTTTTACTGTTAG 2865 0.4133 MPVRQMKESSEQHIVIKTSLQNSKNAPAPAPAPSSELNHKQASLQPRNKGRRRGRGGIKSDQVEILMRTSTSSNGNVGFPTSSKSLNFATRPGFGTVGTKCIVKANHFFAELPDKDLNQYDVTITPEVSSRTVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGQLPFSWKDFMIKLVDEEDGVNCPKRVKEYRVVIKFVAKANLHHLGKFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPDIRKPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRPLSDADRIKVKKGLRGVKVEVTHRGSVRRKYRVSGITSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIQYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITSLLKVTCQRPRDRENDILQTVQHNAYDQDPYAKEFGINISEKPASVEARILPAPWLKYHESGKEKNCLPHVGQWNMMNKKMINGMTVNRWACINFSRGLQDSVARTFCNDLAHMCQISGMEFNLEPVIPIYNAKPEQVEKALKHVYQVSTNKTKGKELELLLVILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLLDAVSYRIPLVSDIPTIIFGADVTHPENGEDTSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISYRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVIVQKRHHTRLFPNNHRDRSSTDKSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPEMQENGSTADGGNSSHSSKGTTTRAVGECGVKPLPALKDNVKRVMFYC 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02339 954 CDD Piwi_ago-like 454 904 IPR045246 -
Vifa1g02339 954 FunFam Argonaute 10 474 647 - -
Vifa1g02339 954 Pfam PAZ domain 322 426 IPR003100 GO:0005515
Vifa1g02339 954 Pfam Argonaute linker 1 domain 244 293 IPR014811 -
Vifa1g02339 954 Pfam Piwi domain 585 904 IPR003165 GO:0003676
Vifa1g02339 954 Pfam N-terminal domain of argonaute 100 234 IPR032474 -
Vifa1g02339 954 MobiDBLite consensus disorder prediction 912 930 - -
Vifa1g02339 954 ProSiteProfiles Piwi domain profile. 584 905 IPR003165 GO:0003676
Vifa1g02339 954 MobiDBLite consensus disorder prediction 12 29 - -
Vifa1g02339 954 Gene3D paz domain 289 414 - -
Vifa1g02339 954 SUPERFAMILY PAZ domain 290 450 IPR036085 GO:0005515
Vifa1g02339 954 SMART Piwi_a_2 584 905 IPR003165 GO:0003676
Vifa1g02339 954 Pfam Mid domain of argonaute 493 571 IPR032473 -
Vifa1g02339 954 FunFam Protein argonaute-2 289 415 - -
Vifa1g02339 954 FunFam protein argonaute 10-like 653 954 - -
Vifa1g02339 954 SUPERFAMILY Ribonuclease H-like 576 905 IPR012337 -
Vifa1g02339 954 MobiDBLite consensus disorder prediction 1 61 - -
Vifa1g02339 954 Gene3D - 474 647 - -
Vifa1g02339 954 MobiDBLite consensus disorder prediction 909 930 - -
Vifa1g02339 954 CDD PAZ_argonaute_like 295 409 - -
Vifa1g02339 954 ProSiteProfiles PAZ domain profile. 296 410 IPR003100 GO:0005515
Vifa1g02339 954 Pfam Argonaute linker 2 domain 436 482 IPR032472 -
Vifa1g02339 954 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 77 906 - -
Vifa1g02339 954 SMART PAZ_2_a_3 300 432 IPR003100 GO:0005515
Vifa1g02339 954 SMART DUF1785_2 243 295 IPR014811 -
Vifa1g02339 954 Gene3D - 653 954 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02339 Vifa-Chr1 375729335 375734699 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02339 84 954 Eukaryotic Initiation Factors Gene Family AT5G43810 86.712 0.0 1624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02339 K11593 - gmx:100816999 1703.34