LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g02338	ATGGACCCATGGCTCGACGATCTAACCGACGACCTCCAAAGCCTAAGCTTCGCCTCCACAACCACCACCACCGCCGACATCAAACGCAGCACAAGCTTCAGTTCCGAAACAACCACAAACGCCTCAACTTCCACAAGATCCCTCCCTCCAACCACCAAACCTCACGCTCCTTCCTCCGACCCTCGCTGGTCCGCCATTCACCGGATCCGATCAGAGTCACCTTCTCGCCGCATACTCCCTTCCGACCTCCGCTTCTCCCGCCGTCTCGGCTCTGGGGACATCAGTTCCGTTTATCTGGCTGAACTCAACGACGACGGGAAAATCCCGGCGATGTTCGCCGCGAAAGTGATGGATAAGAAGGAGCTTATTAGTAGGAGTAAGGAGGGAAGAGCGAAGACGGAGAGAGAAATACTTGAATCCCTTGATCATCCTTTTTTGCCTACTCTTTATGCTACCATCGACGCTGCCAAATGGCTTTGTCTGTTAACGGAGTTTTGCTCCGGCGGCGATCTTCATGTTCTCCGGCAACGGCAGCAGAATAAACGCTTCACTGAATCCGCCGTGAGATTCTATGCATCAGAGGTGTTAATGGCACTTGAATATCTTCACATGTTGGGAATAGTATACCGTGATCTCAAACCAGAGAACGTGTTAGTTAGATCAGATGGCCACATCATGCTCACAGACTTTGATCTCTCTTTAAAATGTGATGACAATTCCACACCAACAGCTCAGATCATAATCTCCAGCCAAGACTCTCCACAAGTAGCCCCACAGAAAAACCCCCACTCCGAACCCTCTCAATTCGCCTCATCTTCATGCATAATACCCAACTGTATAGTCCCAGCAGTATCCTGTTTCCAACCAAAACGCAAGCGAAAGAAGAAACAGACTCATCTCCACGGCCCTGAGTTTGTTGCTGAACCTATCGATGTTCGGTCCATGTCATTCGTTGGGACACACGAATACTTAGCTCCTGAAATAGTCTCTGGTGAGGGACACGGCAGTGCAGTGGATTGGTGGACCTTAGGGATATTTATATTCGAATTATTCTACGGCGTCACACCTTTTAGAGGCTTGGATAATGAACTCACTCTAGCAAACATCGTGGCTCGAGCTTTGGAGTTCCCCAAGGAACCCACCGTGCCAACCACGGCAAAAGATCTTATCTCACAGTTACTGATTAAGGACCCAGCAAGGAGGTTGGGATCAATAATGGGAGCTTCTACAATCAAACACCACTCATTTTTCCAAGGTGTGAATTGGGCATTGTTAAGGTGTACAACTCCACCTTATGTTCCACCACCTTATACTAAAGATAAAGAAGATGTTTCTGATGAAAGTTGTCCACAAACTCCTGTTGATTATTATTGA	1374	0.4818	MDPWLDDLTDDLQSLSFASTTTTTADIKRSTSFSSETTTNASTSTRSLPPTTKPHAPSSDPRWSAIHRIRSESPSRRILPSDLRFSRRLGSGDISSVYLAELNDDGKIPAMFAAKVMDKKELISRSKEGRAKTEREILESLDHPFLPTLYATIDAAKWLCLLTEFCSGGDLHVLRQRQQNKRFTESAVRFYASEVLMALEYLHMLGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCDDNSTPTAQIIISSQDSPQVAPQKNPHSEPSQFASSSCIIPNCIVPAVSCFQPKRKRKKKQTHLHGPEFVAEPIDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGIFIFELFYGVTPFRGLDNELTLANIVARALEFPKEPTVPTTAKDLISQLLIKDPARRLGSIMGASTIKHHSFFQGVNWALLRCTTPPYVPPPYTKDKEDVSDESCPQTPVDYY	457

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g02338	457	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	207	219	IPR008271	GO:0004672\|GO:0006468
	Vifa1g02338	457	SUPERFAMILY	Protein kinase-like (PK-like)	61	447	IPR011009	-
	Vifa1g02338	457	Gene3D	Phosphorylase Kinase; domain 1	82	169	-	-
	Vifa1g02338	457	FunFam	serine/threonine-protein kinase D6PKL2	82	169	-	-
	Vifa1g02338	457	Gene3D	Transferase(Phosphotransferase) domain 1	170	241	-	-
	Vifa1g02338	457	FunFam	serine/threonine-protein kinase D6PK-like	170	237	-	-
	Vifa1g02338	457	PANTHER	FLIPPASE KINASE 1-RELATED	27	439	-	-
	Vifa1g02338	457	SMART	serkin_6	83	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g02338	457	MobiDBLite	consensus disorder prediction	436	457	-	-
	Vifa1g02338	457	MobiDBLite	consensus disorder prediction	19	63	-	-
	Vifa1g02338	457	MobiDBLite	consensus disorder prediction	19	53	-	-
	Vifa1g02338	457	Pfam	Protein kinase domain	314	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g02338	457	Pfam	Protein kinase domain	86	292	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g02338	457	ProSiteProfiles	Protein kinase domain profile.	83	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g02338	457	Gene3D	Transferase(Phosphotransferase) domain 1	313	435	-	-
	Vifa1g02338	457	FunFam	serine/threonine-protein kinase D6PK-like	312	435	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g02338	Vifa-Chr1	374541659	374545589	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g02338	1	457	AGC Kinase Gene Family	AT3G44610	65.458	0.0	569

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Vifa1g02338		Pkinase	1.5e-36	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g02338	K08286		-	gmx:100792738	733.406