Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02331 ATGAAGGGAGAAAGCGAGTGCTTCCAGTGCCTCCAACTTCGAATCAACTCGGATTTCTCCGATCAACTCGTCTTCAATCATGCCATTTCCGATTTTCCGTTTCCTTTCGGATCCTCAGCTGTTCTCCATATTACTGGTTCAGCAGAGGGTGAATCTTCAAGTGGTCAGTTTATATTGCAGTATATGTCTAGTCATGAGAACACTTGTTTTACCAATTATGTAAATGAATATATTTTGGATAGTAGTGAAAGCACTAGGAGTGATGACCATGATATTGGTTGTGGCCAATATAATGATATAGTTAATGGTGGAAATGAATTTGCCTTATCCGATGAGTCTGAAACTGGTAAAGTTCCATCCAGGAATAGGACTTGCAATCATTCTGGAAGGTTTTCTTGCTCGAGGACGATCGCTTCGCTTGCCCCGAACGCTCATGTTGACAAGTGTTCCTTTTCTGTACTTCAAGAGGTTGCCAATGATTTCTTGTCCGGGTTAACTGAAGGTCACGTGTTAGAATCACTTGGTCTTTTCATCGACGGGAAAGCATCTGGGCGGGACAGTATGAATTTCCTTAGTTTAATTGGGTTTCCGTCATTTGAAGAACACACCTTTCCAGGCACTTTGAGGCATCCAAACATAGCTCCCGTACTCGCAATTCTAAAAGCGTCTGACCATACTAACATGGTGCTTCCGAAGACTCCATACAACTTGGAAACTATTCTTCATTTTAACCCCAATGCAATAAAGTCTGATTGGAATAGAAGATTTCTTATGTATCAGCTACTCTCGGCCTTATTGTACTTGCATGGCTTTGGGGTTTCCCATGGTAATATATGCCCGTCCAATATCATGTTGACGGACTCATTATGGTCTTGGCTGAGATTATGGAATGAACCTGTATTAGAATCTAATTTAACTTTGCAAGAGAGTGAGAGTGTTAATTCAAAACCTGCAAAAATTGGTTGTTGTAATGGTAGCTGTCATTCTAATGATCTTTATGCTGATCTAAAACTTTCTCCACAAATGGATTGGCATTCTAGCTTTCATCAGTGGTGGAAAGGAGAACTAAGTAATTTTGAGTATTTACTCATCTTAAACAGATTAGCAGGAAGAAGGTGGGGGGACCATACATTTCATCCAGTAATGCCTTGGGTTGTGGATTTTAGCTCAAAACCGGATGATAATTGTGATGCAGGGTGGCGAGACTTAAGCAAGAGCAAATGGCGCTTAGCAAAAGGTGATGAACAGTTGGATTTTACCTATTCAACGTCTGAAATCCCTCATCATGTATCAGATGAATGTCTGTCGGAATTGGCTGTCTGCAGCTATAAAGCAAGAAGGTTGCCTTTGAGTGTTCTTCGGATGGCAGTTCGTTCAGTGTACGTACCTAATGAATATCCTTCGTCAATGCAGAGGCTCTATCAATGGACGCCTGATGAATGCATTCCAGAGTTTTATTGTGATGGCCAAATTTTTAGGTCGATACATGATGGTATGGCGGATTTGGCTATACCTTCTTGGGCAGAGAGCCCCGAGGATTTCATTAAATTGCATCGTGATGCATTGGAAAGTAATAGGGTGTCATTTCAACTCCATCACTGGATAGATATAATCTTTGGGTACAAAATGTCTGGCCAGGCCGCAGTTGTTGCTAAGAATGTTATGCTTACTCAATCAGAATCCACTATACCAAGACCAACTGGACGTCGTCAGCTTTTTCTGCGACCACACCCCATTCGACACGCCACTGCCAGAATAACACGTAATGGGTCCAATAAATATGCCAAAGTTTTGACCCAAACAAATGAAATACAGCGTGAGACATCTCTTCTATCTGAAACTGCTTATCTACAAGAACTGGAACAAGCATCTGCATTTTCGGAACATGCTAGGCATTTGAATGCCTGTTACCGTTACCCACTAAGTCAGATGAAAAGAAAAAACATCTCTTCTCTGGGAGATCCAACAGCAGGGACACTTAATAAAAATATAAGTGACGTATCTTTGATTGACAGAAATTACTGGGTGCCGTATAAAATGAATCATATATCCTTTCTTCAACATATGAAAGAGGAAGATGAAGGCTCCTCAGGGTATCCAGACTTGCTTCTCTGGAGGCAGAAGTTGTCTTCTTCAAGACTTGCCTCTATAGATATTGCAAGGGACATATTTTCTGTCGGTTGTCTCTTGGCAGAACTTCATCTTTGCAGGCCACTCTTTGATTCAATCTCATTGGAAATATACTTGGAGGATGGAACGTTGCCGGGATTTCTGCAGGAACTACCTCCTCATGTTCGAATACTTGTTGAAGCATGCATCCAAAAGGATTGGATGAGGAGGCCATCAGCCAAAATTCTTCTGGAATCACCTTATTTTCCAAAAACAATCAAGTCGTCCTACTTGTTTCTTGCTCCACTTCATCTTGTTGCTAGAGATGAGTCTCGCCTTCGTTTTGCTGCAAATCTTGCAAAGCAGGGAGCTCTCAGGCAAATGGGTGCATTCGCAACCGAAGTGTGTGCTACTTATTGCCTACCACTTATAGTGAATGCTGTGAGTGACACTGAAGCTGAATGGGCATATATATTACTGAAGGAATTGATAAAATGCCTAACAGCACAAGCAGTGAAAACGTTAATACTGCCAACCATACAGAAAATTTTACAGAACACAGGTTATTTACATTTAAAGGTTTCCCTTTTACAAGATTCATTTGTACGTGAAATATGGAACCGAGTTGGTAAACAAGCATATCTGGAGACTATTCACCCATTGGTCTTATCAAACTTGTATATTTCTCCGGATAAAAATTCCGCTGCATCTGCTTCGGTGCTTCTAATTGGTTCTAGTGAAGAGATTGGTGTACCAATTACCATCCATCAGACTATCTTGCCTCTTGTTCACTGCTTTGGGAAAGGACTATGTGTAGATGGCATTGATGTGCTGGTCAGAATCGGGGGTATTTTTGGGGAAACTTTTATTGTTAAACAGATGCTGCCATTACTGAAAAATGTTTTTCGGTCCTTCATTGATGTGTCAAGCATGAATAAGCCTGATCCTGTCCAGAGTTGGAGTGCTTTAGCACTTATTGATTGTATGATGACTATAGATGGCCTTGTAGCTTTCTTGTCAGAAGAAATCATTGTAAAGGAGCTGCTCGAAGACATAAGTTGCATACACATTGGGGTTCTTATGCAGAAACATATGGAATTTGCGGTGCTTCAGGTTGCTGCTACTACTCTCTTTGGAATTTGTCAGCGGATGGGAGCAGATTTGACGGCATTGCATATTCTTCCAAAACTTAAAGAACTATTTGACGAGCTTGCTTTCTCCCAGGAAATTTCTAAAGGTTCGACTACTGTCGGCAGAAACTTGAAGGTTTCCAAATTAAAAATTGGAGGGGACTTCCAAATTGAGAGTCATATGGATCTTGTGTTGCTTCTCTATACTTCGTTCGCGTCTCTTCTTGGGATTGAGAAGCTTCGTCAATGTTGTGCTACATGGTTGCTTCTTGAACAATTACTTCTACGCCGTCATAACTGGAAGTGGGAATATGCAGGAGAATCATCAAGAAATGGTTCAGAAAATAACATTGCTAGAAGACCTACAATTTACCAAGGACTCACATCTGAATACAATCCCGCAAAGTTGTTGCTTAATGGGGTTGGATGGTCAATTCCACAATCCCAGGGAAGTAGAGGTGCTAAAAATTTGATTCAGAGAAGATCATTCAAACTTCATCAAAGCCCAGTAGTAATGCAAGAAGGAATGCCAAACCAAGTGAACCTTGAACCATGGTTTTGGTTCCCTAGTCCAGCCACCATCTGGGATGGGCCTTCATTTCTTGGGCGAGTGGGGATCCAAAAAGATGATCTTCCTTGGAAGATCAGAGCATCTGTAATCCACTCTATACGTGCACATCATGGAGCAGTGAGGTCTCTGGCTGTACATCAGGATGAATCTACCATTTTTACTGCTGGAATTGGCCAAGGATATAAAGGAACTGTTCTGAAGTGGGAATTGAGCCGAACTAACTGTCTGTCCGGCTATTATGGCCACGAGGAGGTAGTGAACGATATTTGCATTTTATCATCTAGTGGAAGAGTGGCATCTTGTGATGGAACAATTCATATTTGGAATAGTCAAACAGGGAAGCAAATATCTGTATTTGCCGAGTCCGAAACTGAATCTGGCCATCCTATAAGCCATCCGACATCTGTGCCAAAAATCAGCAGTGACCAGGCAAATGTCCTTAATTTGAATACTCTATCAAATGGAATGTTGTCTAGCGCTTTTGATTCAAGCCTTTATACTTGTATGCATCTGTTAGACTCTGCTGAAACTCTTGTAGTTGGCACTGGAAATGGTTCTCTCAGGTTCTTTGATGTTGCTCGAGGTCAAAAGCTTCATATCTGGAGGGGGGAATCTAATGAGCCTAGTTTTCATTCACTTATTTCTGCCATTTGTTCCTCTGGTTCTAACAAGACTCAAGCAGATGGAATTTCCAACTCACCATCTTTAATTGCAACTGGACTAAGCTCAGGTCACTGTAAATTATTTGATGCAAAGAGTGGAAATGTTGTTTCTTCTTGGCGTGCTCATGATGGATATTTGACTAAGTTGGCATCACCTGAAGAACATCTACTCATTTCCAGCTCTCTAGACAGAACTTTACGAGTCTGGGACTTGAGAATGAATTCACCGTCACAACCCATTATTTTCAGAGGTCATTCAGATGGCATATGCAGTTTCTCCATTTGGGGCCAAGATGTTATTTCAATTTCCCGGAATAGGATTGGGCTTCTTTCCTTGTCTAAATCTGCCACTGAAATGGATGGGCAGCATCACATTATCCCCCAGAAACTCTATGTTTCTGATAATGGAATGAGAAGCTTATCAGCATTATCAAGTATCAGTATACTTCCTTTCTCGCGATTGTTTCTTATTGGAACAGAAGATGGTTATTTAAGAATATGTTGTTAA 4980 0.4118 MKGESECFQCLQLRINSDFSDQLVFNHAISDFPFPFGSSAVLHITGSAEGESSSGQFILQYMSSHENTCFTNYVNEYILDSSESTRSDDHDIGCGQYNDIVNGGNEFALSDESETGKVPSRNRTCNHSGRFSCSRTIASLAPNAHVDKCSFSVLQEVANDFLSGLTEGHVLESLGLFIDGKASGRDSMNFLSLIGFPSFEEHTFPGTLRHPNIAPVLAILKASDHTNMVLPKTPYNLETILHFNPNAIKSDWNRRFLMYQLLSALLYLHGFGVSHGNICPSNIMLTDSLWSWLRLWNEPVLESNLTLQESESVNSKPAKIGCCNGSCHSNDLYADLKLSPQMDWHSSFHQWWKGELSNFEYLLILNRLAGRRWGDHTFHPVMPWVVDFSSKPDDNCDAGWRDLSKSKWRLAKGDEQLDFTYSTSEIPHHVSDECLSELAVCSYKARRLPLSVLRMAVRSVYVPNEYPSSMQRLYQWTPDECIPEFYCDGQIFRSIHDGMADLAIPSWAESPEDFIKLHRDALESNRVSFQLHHWIDIIFGYKMSGQAAVVAKNVMLTQSESTIPRPTGRRQLFLRPHPIRHATARITRNGSNKYAKVLTQTNEIQRETSLLSETAYLQELEQASAFSEHARHLNACYRYPLSQMKRKNISSLGDPTAGTLNKNISDVSLIDRNYWVPYKMNHISFLQHMKEEDEGSSGYPDLLLWRQKLSSSRLASIDIARDIFSVGCLLAELHLCRPLFDSISLEIYLEDGTLPGFLQELPPHVRILVEACIQKDWMRRPSAKILLESPYFPKTIKSSYLFLAPLHLVARDESRLRFAANLAKQGALRQMGAFATEVCATYCLPLIVNAVSDTEAEWAYILLKELIKCLTAQAVKTLILPTIQKILQNTGYLHLKVSLLQDSFVREIWNRVGKQAYLETIHPLVLSNLYISPDKNSAASASVLLIGSSEEIGVPITIHQTILPLVHCFGKGLCVDGIDVLVRIGGIFGETFIVKQMLPLLKNVFRSFIDVSSMNKPDPVQSWSALALIDCMMTIDGLVAFLSEEIIVKELLEDISCIHIGVLMQKHMEFAVLQVAATTLFGICQRMGADLTALHILPKLKELFDELAFSQEISKGSTTVGRNLKVSKLKIGGDFQIESHMDLVLLLYTSFASLLGIEKLRQCCATWLLLEQLLLRRHNWKWEYAGESSRNGSENNIARRPTIYQGLTSEYNPAKLLLNGVGWSIPQSQGSRGAKNLIQRRSFKLHQSPVVMQEGMPNQVNLEPWFWFPSPATIWDGPSFLGRVGIQKDDLPWKIRASVIHSIRAHHGAVRSLAVHQDESTIFTAGIGQGYKGTVLKWELSRTNCLSGYYGHEEVVNDICILSSSGRVASCDGTIHIWNSQTGKQISVFAESETESGHPISHPTSVPKISSDQANVLNLNTLSNGMLSSAFDSSLYTCMHLLDSAETLVVGTGNGSLRFFDVARGQKLHIWRGESNEPSFHSLISAICSSGSNKTQADGISNSPSLIATGLSSGHCKLFDAKSGNVVSSWRAHDGYLTKLASPEEHLLISSSLDRTLRVWDLRMNSPSQPIIFRGHSDGICSFSIWGQDVISISRNRIGLLSLSKSATEMDGQHHIIPQKLYVSDNGMRSLSALSSISILPFSRLFLIGTEDGYLRICC 1659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02331 1659 Gene3D - 1290 1499 IPR015943 GO:0005515
Vifa1g02331 1659 Pfam Beige/BEACH domain 350 559 IPR000409 -
Vifa1g02331 1659 PANTHER GH12955P 4 1659 - -
Vifa1g02331 1659 ProSitePatterns Trp-Asp (WD) repeats signature. 1548 1562 IPR019775 -
Vifa1g02331 1659 Gene3D Transferase(Phosphotransferase) domain 1 699 800 - -
Vifa1g02331 1659 ProSiteProfiles BEACH domain profile. 336 606 IPR000409 -
Vifa1g02331 1659 SUPERFAMILY Protein kinase-like (PK-like) 205 290 IPR011009 -
Vifa1g02331 1659 Gene3D BEACH domain 341 591 IPR036372 -
Vifa1g02331 1659 ProSiteProfiles Trp-Asp (WD) repeats profile. 1542 1570 IPR001680 GO:0005515
Vifa1g02331 1659 SMART WD40_4 1424 1461 IPR001680 GO:0005515
Vifa1g02331 1659 SMART WD40_4 1296 1339 IPR001680 GO:0005515
Vifa1g02331 1659 SMART WD40_4 1624 1659 IPR001680 GO:0005515
Vifa1g02331 1659 SMART WD40_4 1342 1379 IPR001680 GO:0005515
Vifa1g02331 1659 SMART WD40_4 1523 1561 IPR001680 GO:0005515
Vifa1g02331 1659 SMART WD40_4 1464 1520 IPR001680 GO:0005515
Vifa1g02331 1659 SUPERFAMILY BEACH domain 338 580 IPR036372 -
Vifa1g02331 1659 SMART Beach_2 348 580 IPR000409 -
Vifa1g02331 1659 Gene3D - 1500 1659 IPR015943 GO:0005515
Vifa1g02331 1659 SUPERFAMILY WD40 repeat-like 1299 1657 IPR036322 GO:0005515
Vifa1g02331 1659 CDD Beach 350 580 IPR000409 -
Vifa1g02331 1659 Pfam Protein kinase domain 200 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02331 1659 Pfam WD domain, G-beta repeat 1525 1561 IPR001680 GO:0005515
Vifa1g02331 1659 Pfam WD domain, G-beta repeat 1344 1379 IPR001680 GO:0005515
Vifa1g02331 1659 Gene3D Transferase(Phosphotransferase) domain 1 198 291 - -
Vifa1g02331 1659 SUPERFAMILY Protein kinase-like (PK-like) 717 808 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02331 Vifa-Chr1 373986710 373997595 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDKL-Cr Vifa1g02331 Beach 2.2e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02331 K17601 - gmx:100809116 2773.42