Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02330 ATGCTGAAAACACGTGTGCCTCAATATCTCTCTGGCGAAACCCTAAATCGAGTTCTCATTCCTCTTCCCTCTACATCAAAAATGAAGGTTATCGCTGCTTACTTGTTGGCCGTTTTGGGAGGCAACGCAGCCCCTTCAGCTGCTGATATTAAGAAGATTCTCGCATCAGTTGGAATTGAGGCTGAGGACTCAAACATTGAGTTGCTCATAACCGAAGTCAAGGGCAAGGATTTTGCTGAGCTCATTGCCAGTGGAAGAGAAAAGTTGGCTTCAGTTCCATCTGGTGGTGGTGGTGGTGCTGTTGCTCTTTCTGCTGCATCTGGAGGAGGTGCTGCAGCTGCTGCTCCAGCTGCTGAAGCTAAGGAGGAGAAGAAGGTGGAAGAAAAGGAAGAATCTGATGATGACATGGGATTCAGCTTATTCGACTAA 429 0.4755 MLKTRVPQYLSGETLNRVLIPLPSTSKMKVIAAYLLAVLGGNAAPSAADIKKILASVGIEAEDSNIELLITEVKGKDFAELIASGREKLASVPSGGGGGAVALSAASGGGAAAAAPAAEAKEEKKVEEKEESDDDMGFSLFD 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02330 142 CDD Ribosomal_P2 28 142 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vifa1g02330 142 Hamap 50S ribosomal protein L12 [rpl12]. 29 142 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vifa1g02330 142 MobiDBLite consensus disorder prediction 118 132 - -
Vifa1g02330 142 Gene3D - 27 86 IPR038716 -
Vifa1g02330 142 FunFam 60S acidic ribosomal protein P2 25 86 - -
Vifa1g02330 142 Pfam 60s Acidic ribosomal protein 45 141 - -
Vifa1g02330 142 MobiDBLite consensus disorder prediction 114 142 - -
Vifa1g02330 142 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 28 142 IPR044076 GO:0002182|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02330 Vifa-Chr1 373865956 373868548 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02330 28 97 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 78.571 5.00e-32 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02330 K02943 - csav:115717043 121.709