Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02310 ATGTCGCCGGTGATCGGAGCAAACGCGCCTCTCTTGTCAGGATCCAAGCCTTCTACAAAGCCGGCAACGGTTTCCGGTGCGGTGTTCAATGTCGCAACAAGTATAATTGGCGCCGGAATCATGTCTCTTCCGGCAACTCTGAAGGTCCTCGGTGTGATTCCGGCGTTCGTTTTGATTCTGGTGATAGCTTTACTGGCTGAAATTTCTGTTGAGTTTTTAATGAGGTTTACGCGTGCGGGTGAAACGACGACGTATTCTGGTGTCATGAGAGAAGCTTTTGGTCCTTTAGGAGCTGCAGCAACTCGACTTTGCGTTGTGATTACTAATATGGGGTGCTTGATCATGTACCTAATCATTATGGCGGATGTATTTTCTGGAAATAAACCTGAAGGAGTAGTACATTTGGGTGTTTTGCAACAATGGTTTGGGGTTCATTGGTGGAATTCAAGAGAATTTGCTTTAATCTTTACCATGATCTTCATTTTGTTTCCATTGGTATTGTACCGTCGTGTAGAGTCATTGAAGTTCAGTTCTGCAGTATCAACTCTTCTGGCTGTGGCATTTGTTACAATATGTTCTGTGCTGGCAATTATTGCTCTTGTGGAAGGAAAAACACAGACACCTAGACTGGTCCCACGTTTGGACAAACAAACATCTTTCTTTGATCTTTTCACTGCAGTTCCGGTCATTGTAACAGCCTACACATTCCATTTTAATGTACATCCAATTGGATTCGAACTCGGAAAACCATCAGAAATGACAAAAGCGGTTAGAATAGCATTAATCCTCTGTGCACTTATATACTTCTCAATAGGTCTATTTGGTTACCTTTTATTTGGTGATTCAACTCAATCAGACATTCTAATCAATTTTGACAGTAGTGACGATTCATCTTCTGGTCATATACTCAATACTTTGGTCCGTTTAAGCTATGCTTTACATATCATGTTGACATTTCCTGTCCTGAACTTTTCTTTGAGAACCAACATTGATGAATTTCTCTTCCCTAAAAGACCTTTATTAGCCACAGATAACAAGAGGTATATGATCTTGACACTGGCTCTGTTGGTTCTTAGTTACATTGCTGCTGTTGCGATTCCGGATATTTGGTACATTTTTCAGTTTATGGGATCAACCTCTGCTGTTTGTCTTTCCTTTGTTTTCCCTGGTTCTATTGTTTTAAGGGATATTCATGGTATATCAACAAGAAAGGACAAGATTATAGCACTTGTTATGGTTATTACAGCTTTAGTAACAAGTGTGGTTGCTATCTCCAACAACATATATAAGCTGTTTTAG 1299 0.4018 MSPVIGANAPLLSGSKPSTKPATVSGAVFNVATSIIGAGIMSLPATLKVLGVIPAFVLILVIALLAEISVEFLMRFTRAGETTTYSGVMREAFGPLGAAATRLCVVITNMGCLIMYLIIMADVFSGNKPEGVVHLGVLQQWFGVHWWNSREFALIFTMIFILFPLVLYRRVESLKFSSAVSTLLAVAFVTICSVLAIIALVEGKTQTPRLVPRLDKQTSFFDLFTAVPVIVTAYTFHFNVHPIGFELGKPSEMTKAVRIALILCALIYFSIGLFGYLLFGDSTQSDILINFDSSDDSSSGHILNTLVRLSYALHIMLTFPVLNFSLRTNIDEFLFPKRPLLATDNKRYMILTLALLVLSYIAAVAIPDIWYIFQFMGSTSAVCLSFVFPGSIVLRDIHGISTRKDKIIALVMVITALVTSVVAISNNIYKLF 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02310 432 PANTHER AMINO ACID TRANSPORTER 16 418 - -
Vifa1g02310 432 Pfam Transmembrane amino acid transporter protein 22 423 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02310 Vifa-Chr1 370998633 371006985 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02310 1 431 Amino Acid or Auxin Permease AAAP Family AT3G56200 58.756 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02310 - - tpra:123881388 727.628