Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02307 ATGTCGCCGGTGATCGGAGCAAACGCGCCTCTCTTGTCAGGATCCAAGCCTCCCACAAAGCCGGCAACGGTTTCCGGTGCGGTGTTCAATGTCGCAACGAGCGTAATTGGCGCCGGAATTATGTCTCTTCCGGCAACTCTGAAGGTCCTCGGTGTGATTCCGGCGCTCGTTTTGATTCTGGTGATAGCTTTACTGGCTGAAATTTCTGTTGATTTTTTAATGAGGTTTACGCGTGCGGGTGAAACGACGACGTATTCTGGTGTCATGAGAGAAGCTTTTGGTCCCTTAGGAGCTGCAGCAACTCGACTTGCCGTTGTGATTAATAATATGGGGTGTTTAATTATGTACCTAATCATTATGGCGGATGTATTTTCTGGAAATAAACCTGAAGGAGTAGTACATTTGGGTGTTTTGCAACAATGGTTTGGGGTTCATTGGTGGAATTCAAGAGAATTTACTTTAATCTTTACCATGATCTTCATTTTGTTTCCGTTGGTATTGTACCGTCATGTAGAGTCATTGAAGTTTTGTTCTGCAGTATCAACTCTTCTGGCTGTGGCATTTGTTACAATATGTTCTGTGTTGGCAATTATTGCTCTTGTGGAAGGAAAAACACAGACACCTAGATTGGTCCCTCGTTTGGACAAACACACATCTTTCTTTGATCTTTTCACTGCAGTTCCGATCATTGTAACAGCCTACACATTTCATTTTATTGTACATGCAATTGGATTCGAACTTGGAAAACCATCAGAAATGACAAAAGCAGTTAGAATAGCACTAATCCTCTGTGCACTCATATACTTCTCAATCGGTCTATTTGGTTACCTTTTATTCGGTGATTCAACTCAATCCGACATTCTAATCAATTTCGACCACAATGCTGATTCATCATTGGGTCATATACTCAATACTTTGGTCCGTTTAAGCTATGCTTTACATATCATGTTGACATTTCCTGTCCTGAACTTTTCATTGAGAACCAACATTGATGAATTTCTATTCCCTAAAAAACCTTTGTTAGCCACAGATAACAAGAGGTTTATGATCCTGACACTGGCTCTGTTGGTTCTTAGTTACATTGCTGCAGTAGCAATTCCGGATATTTGGTACGTTTTTCAGTTTATGGGATCAACCTCGGCTGTTTGTCTTTCCTTAGTTTTCCCTGGTTCTATTGTTTTAAGGGATATTCATGGTATATCAACGAGAAAGGATAAGATTATAGCACTTGTTATGGTTATACTAGCCGTAGCAACAAGTGTGGTTGCTGTGTCCAACAACATATATAAGCTGTTTTAG 1299 0.4065 MSPVIGANAPLLSGSKPPTKPATVSGAVFNVATSVIGAGIMSLPATLKVLGVIPALVLILVIALLAEISVDFLMRFTRAGETTTYSGVMREAFGPLGAAATRLAVVINNMGCLIMYLIIMADVFSGNKPEGVVHLGVLQQWFGVHWWNSREFTLIFTMIFILFPLVLYRHVESLKFCSAVSTLLAVAFVTICSVLAIIALVEGKTQTPRLVPRLDKHTSFFDLFTAVPIIVTAYTFHFIVHAIGFELGKPSEMTKAVRIALILCALIYFSIGLFGYLLFGDSTQSDILINFDHNADSSLGHILNTLVRLSYALHIMLTFPVLNFSLRTNIDEFLFPKKPLLATDNKRFMILTLALLVLSYIAAVAIPDIWYVFQFMGSTSAVCLSLVFPGSIVLRDIHGISTRKDKIIALVMVILAVATSVVAVSNNIYKLF 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02307 432 PANTHER AMINO ACID TRANSPORTER 17 419 - -
Vifa1g02307 432 Pfam Transmembrane amino acid transporter protein 22 421 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02307 Vifa-Chr1 370412776 370414607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02307 1 431 Amino Acid or Auxin Permease AAAP Family AT3G56200 57.407 9.42e-177 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02307 - - tpra:123881388 691.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02307 1 370412776 370414607 Vifa1g02307 1 370412776 370414607 ECH
Vifa2g01744 2 450593778 450595660 Vifa1g02307 1 370412776 370414607 PCT