Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02305 ATGTATAGCAATTTCAAGGAACAGGCGATAGAGTACGTGAAGCAAGCCGTTCACGAAGACAATGCCGGAAACTACGCGAAAGCGTTTCCTTTATACATGAACGCTTTGGAGTATTTCAAGACTCATTTGAAGTACGAGAAGAACCCTAAAATCAGAGAAGCTATTACGCAGAAATTCACCGAGTATTTGCGTCGTGCTGAGGAGATCAGGGCTGTGCTTGATGATGGTGGGCCTGGTCCAGCTTCTAATGGCGACGCTGCTGTTGCTACGAGGCCCAAGAGTAAGGGTAAGGATGGTGGTGGGAAAGATGGTGAAGGTGGAGGAGATGGAGAGGATCCGGAGCAGGCGAAGCTTAGGGCGGGGTTGAATTCGGCGATTATTAGGGAGAAGCCGAATGTTAAGTGGAATGATGTTGCTGGGTTGGAGAGTGCTAAACAGGCTTTGCAGGAAGCTGTTATTTTGCCTGTCAAGTTCCCTCAATTTTTTACTGGTAAAAGACGACCATGGAGAGCATTTTTGTTGTACGGACCTCCTGGAACTGGTAAATCATATTTAGCCAAGGCAGTTGCAACTGAGGCTGATTCAACATTTTTCAGTATTTCTTCATCAGATCTTGTTTCAAAGTGGATGGGTGAAAGTGAAAAATTGGTTTCAAACCTTTTCCAAATGGCCCGAGAAAGTGCCCCCTCTATCATATTTATTGATGAAATAGATTCCCTATGTGGCCAGCGTGGAGAAGGCAATGAGAGTGAAGCTTCAAGACGAATTAAAACAGAACTTCTGGTGCAGATGCAGGGTGTAGGAAACAATGACCAGAAAGTTCTCGTTCTTGCAGCAACAAATACACCTTATGCTTTAGACCAGGCAATAAGGCGTCGTTTTGATAAGCGTATATATATTCCACTACCAGAATTGAAGGCTCGCCAACACATGTTCAAGGTGCATCTTGGAGATACTCCTCATAATTTGACTGAAAGTGATTTTGAATATTTGGGTAGCAGGACAGGGGGGTTTTCAGGTTCAGATATAGCTGTCTGTGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCTATGTTCTTCTGTAAGAGTCCGGAGGGTATGTGGATCCCATGTGGACCAAAGCAACAGGGCGCAGTTCAAACTACAATGCAGGATCTTGCCACACAAGGACTTGCTTCTAAGATTCTTCCACCTCCTATCACGAGAACTGATTTTGAGAAGGTTCTGGCAAGACAAAGGCCCACAGTAAGCAAAAATGACCTTGAGGTTCATGAGAGATTCACAAAGGAGTTTGGAGAAGAAGGTTAA 1320 0.4447 MYSNFKEQAIEYVKQAVHEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVATRPKSKGKDGGGKDGEGGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPELKARQHMFKVHLGDTPHNLTESDFEYLGSRTGGFSGSDIAVCVKDVLFEPVRKTQDAMFFCKSPEGMWIPCGPKQQGAVQTTMQDLATQGLASKILPPPITRTDFEKVLARQRPTVSKNDLEVHERFTKEFGEEG 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02305 439 FunFam Vacuolar protein sorting-associated protein 4 131 311 - -
Vifa1g02305 439 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Vifa1g02305 439 FunFam vacuolar protein sorting-associated protein 4A 304 419 - -
Vifa1g02305 439 Gene3D - 304 419 - -
Vifa1g02305 439 SMART smart 2 79 IPR007330 -
Vifa1g02305 439 MobiDBLite consensus disorder prediction 91 115 - -
Vifa1g02305 439 Pfam ATPase family associated with various cellular activities (AAA) 173 302 IPR003959 GO:0005524|GO:0016887
Vifa1g02305 439 CDD RecA-like_VPS4 130 300 - -
Vifa1g02305 439 Gene3D - 131 427 IPR027417 -
Vifa1g02305 439 Pfam Vps4 C terminal oligomerisation domain 372 436 IPR015415 -
Vifa1g02305 439 PANTHER AAA DOMAIN-CONTAINING 19 437 - -
Vifa1g02305 439 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Vifa1g02305 439 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 435 IPR027417 -
Vifa1g02305 439 SMART AAA_5 168 304 IPR003593 GO:0016887
Vifa1g02305 439 MobiDBLite consensus disorder prediction 73 115 - -
Vifa1g02305 439 Gene3D - 6 75 - -
Vifa1g02305 439 CDD MIT_VPS4 4 77 IPR045253 -
Vifa1g02305 439 SUPERFAMILY MIT domain 2 81 IPR036181 -
Vifa1g02305 439 ProSitePatterns AAA-protein family signature. 274 293 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02305 Vifa-Chr1 370270136 370274461 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02305 167 360 Calmodulin-binding Proteins AT3G56690 35.714 6.58e-34 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02305 K12196 - gmx:100806836 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02305 1 370270136 370274461 Vifa1g02305 1 370270136 370274461 ECH