Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02299 ATGGCGGAAGAACACAGATTGCAAGCACCGCGATTATGCGTCAACAATTGTGGATTCTTCGGAAGCACCGCCACGGAGAATCTCTGTTCACGGTGCTATCGAGATTTACAGCTTAAGGAACAACAAGCTGAATCAGCGAAACTCGTTCTCAATCAATCGATCTCGGTGCCGGCGAAGGAGGATTTGGTTTCGGAACCGTCGTCTTCGTCGCCGGATCCGGTTGATTTGCCTAGCGTTGTTGAAGAGGCGAAGGCGATACCGTTGCAGCAGAATCGGTGTATGACGTGTAAGAAGCGCGTGGGGCTCACGGGATTTAAGTGCAAGTGCGGGATGATGCTGTGTGGGACCCACCGGTATCCGGAGCAGCATGGTTGTGAGTTTGATTTCAAGGGGCTGGGGAGAGAGCAGATCGCCAAGGCGAACCCAGTGGTGAAGGGTGAGAAACTCGAGAAGATTTGA 459 0.5272 MAEEHRLQAPRLCVNNCGFFGSTATENLCSRCYRDLQLKEQQAESAKLVLNQSISVPAKEDLVSEPSSSSPDPVDLPSVVEEAKAIPLQQNRCMTCKKRVGLTGFKCKCGMMLCGTHRYPEQHGCEFDFKGLGREQIAKANPVVKGEKLEKI 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02299 152 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
Vifa1g02299 152 PANTHER AN1-TYPE ZINC FINGER PROTEIN 9 152 - -
Vifa1g02299 152 Pfam A20-like zinc finger 11 34 IPR002653 GO:0003677|GO:0008270
Vifa1g02299 152 Pfam AN1-like Zinc finger 93 129 IPR000058 GO:0008270
Vifa1g02299 152 Gene3D - 1 68 - -
Vifa1g02299 152 ProSiteProfiles Zinc finger AN1-type profile. 87 133 IPR000058 GO:0008270
Vifa1g02299 152 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Vifa1g02299 152 FunFam Zinc finger AN1-type containing 6 66 148 - -
Vifa1g02299 152 Gene3D - 69 148 IPR035896 -
Vifa1g02299 152 SMART AN1_Zf_4 93 130 IPR000058 GO:0008270
Vifa1g02299 152 SUPERFAMILY AN1-like Zinc finger 82 147 IPR035896 -
Vifa1g02299 152 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02299 Vifa-Chr1 369288302 369288760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02299 1 152 C2H2 Transcription Factor Family AT3G52800 50.289 2.01e-47 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02299 - - gmx:106795660 227.639