Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g02297 | ATGGGTTTGAGGGATCAATACAATATTGTAGAAGACAAAAACCTATACCTTCAAACCCCAACTTTCATTGAATGGCTCAAACCATCTTCATCACTCTCATCATCTCCTTCATCTTCTCTAACTCATAAAAAAAAATCATCTCAAGAAACTTTTCAGTTTTTGCCCTTAAAAGAAGATCATGAGATGCAACAAAAGGAAGGTTTTGAAGTAAAAGAAGCAATTAAACATGTGACTGTTACTTTACACATTGGATTACCTAACATAGGAAGTGAGTTTGATGTTCATAATGAGAAGAATAAGGTTTTTGATCATGTTAAGGAAGAACAAGAGATGAAGAAAAACATACAAGGTTTTTGTTTTAAGGAGCATAAAAGGTTTTGGATACCAACTCCTGCTCAGATCCTTGTTGGACCTATGCAGTTTGCTTGCTCCATATGTAGTAAGACTTTCAATAGATACAACAATATGCAGATGCATATGTGGGGACATGGATCTGAATTTAGGAAAGGACCAGATTCACTTAAAGGAACACAGCCAGCAGCAATGTTAAGGTTACCATGTTATTGTTGTGCTAATGGTTGCAAGAACAATATTAATCATCCAAGAGCAAAACCATTAAAGGATTTTAGAACTCTTCAAACTCATTATAAAAGAAAACATGGAACAAAACCATTTACTTGTAGAAAATGTTCCAAGGCATTTGCTGTTAAAGGTGATTGGAGAACTCATGAGAAAAATTGTGGAAAGTTTTGGTATTGCACTTGTGGTTCTGATTTTAAACACAAAAGATCTCTTAAAGATCATGTTAGATCATTTGGAAAAGGTCACTCCCCTCATCCTTCTCTTGAAGGGTTTGAAGATGAGAAACAATGCAGCAATACGGGTTCCGATGACGATGAACTTGTTCATACATGA | 915 | 0.3519 | MGLRDQYNIVEDKNLYLQTPTFIEWLKPSSSLSSSPSSSLTHKKKSSQETFQFLPLKEDHEMQQKEGFEVKEAIKHVTVTLHIGLPNIGSEFDVHNEKNKVFDHVKEEQEMKKNIQGFCFKEHKRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCANGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFTCRKCSKAFAVKGDWRTHEKNCGKFWYCTCGSDFKHKRSLKDHVRSFGKGHSPHPSLEGFEDEKQCSNTGSDDDELVHT | 304 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g02297 | 304 | Gene3D | Classic Zinc Finger | 140 | 163 | - | - | |
Vifa1g02297 | 304 | SUPERFAMILY | beta-beta-alpha zinc fingers | 119 | 164 | IPR036236 | - | |
Vifa1g02297 | 304 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 143 | 163 | IPR013087 | - | |
Vifa1g02297 | 304 | Gene3D | Classic Zinc Finger | 202 | 279 | - | - | |
Vifa1g02297 | 304 | SMART | c2h2final6 | 225 | 245 | IPR013087 | - | |
Vifa1g02297 | 304 | SMART | c2h2final6 | 141 | 163 | IPR013087 | - | |
Vifa1g02297 | 304 | PANTHER | ZINC FINGER PROTEIN WIP2 | 24 | 292 | IPR043584 | GO:0003700|GO:0010468 | |
Vifa1g02297 | 304 | FunFam | Zinc finger protein WIP2 | 194 | 276 | - | - | |
Vifa1g02297 | 304 | SUPERFAMILY | beta-beta-alpha zinc fingers | 211 | 245 | IPR036236 | - | |
Vifa1g02297 | 304 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 141 | 168 | IPR013087 | - | |
Vifa1g02297 | 304 | MobiDBLite | consensus disorder prediction | 269 | 304 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g02297 | Vifa-Chr1 | 369219423 | 369221055 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g02297 | 8 | 294 | C2H2 Transcription Factor Family | AT1G08290 | 56.418 | 2.99e-124 | 357 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vifa1g02297 | zf-C2H2_6 | 0.00013 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g02297 | - | - | tpra:123899635 | 534.643 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa1g02297 | 1 | 369219423 | 369221055 | Vifa1g02297 | 1 | 369219423 | 369221055 | ECH | |
Vifa1g02297 | 1 | 369219423 | 369221055 | Vifa6g00376 | 6 | 153265801 | 153267852 | PCT |