Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02297 ATGGGTTTGAGGGATCAATACAATATTGTAGAAGACAAAAACCTATACCTTCAAACCCCAACTTTCATTGAATGGCTCAAACCATCTTCATCACTCTCATCATCTCCTTCATCTTCTCTAACTCATAAAAAAAAATCATCTCAAGAAACTTTTCAGTTTTTGCCCTTAAAAGAAGATCATGAGATGCAACAAAAGGAAGGTTTTGAAGTAAAAGAAGCAATTAAACATGTGACTGTTACTTTACACATTGGATTACCTAACATAGGAAGTGAGTTTGATGTTCATAATGAGAAGAATAAGGTTTTTGATCATGTTAAGGAAGAACAAGAGATGAAGAAAAACATACAAGGTTTTTGTTTTAAGGAGCATAAAAGGTTTTGGATACCAACTCCTGCTCAGATCCTTGTTGGACCTATGCAGTTTGCTTGCTCCATATGTAGTAAGACTTTCAATAGATACAACAATATGCAGATGCATATGTGGGGACATGGATCTGAATTTAGGAAAGGACCAGATTCACTTAAAGGAACACAGCCAGCAGCAATGTTAAGGTTACCATGTTATTGTTGTGCTAATGGTTGCAAGAACAATATTAATCATCCAAGAGCAAAACCATTAAAGGATTTTAGAACTCTTCAAACTCATTATAAAAGAAAACATGGAACAAAACCATTTACTTGTAGAAAATGTTCCAAGGCATTTGCTGTTAAAGGTGATTGGAGAACTCATGAGAAAAATTGTGGAAAGTTTTGGTATTGCACTTGTGGTTCTGATTTTAAACACAAAAGATCTCTTAAAGATCATGTTAGATCATTTGGAAAAGGTCACTCCCCTCATCCTTCTCTTGAAGGGTTTGAAGATGAGAAACAATGCAGCAATACGGGTTCCGATGACGATGAACTTGTTCATACATGA 915 0.3519 MGLRDQYNIVEDKNLYLQTPTFIEWLKPSSSLSSSPSSSLTHKKKSSQETFQFLPLKEDHEMQQKEGFEVKEAIKHVTVTLHIGLPNIGSEFDVHNEKNKVFDHVKEEQEMKKNIQGFCFKEHKRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCANGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFTCRKCSKAFAVKGDWRTHEKNCGKFWYCTCGSDFKHKRSLKDHVRSFGKGHSPHPSLEGFEDEKQCSNTGSDDDELVHT 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02297 304 Gene3D Classic Zinc Finger 140 163 - -
Vifa1g02297 304 SUPERFAMILY beta-beta-alpha zinc fingers 119 164 IPR036236 -
Vifa1g02297 304 ProSitePatterns Zinc finger C2H2 type domain signature. 143 163 IPR013087 -
Vifa1g02297 304 Gene3D Classic Zinc Finger 202 279 - -
Vifa1g02297 304 SMART c2h2final6 225 245 IPR013087 -
Vifa1g02297 304 SMART c2h2final6 141 163 IPR013087 -
Vifa1g02297 304 PANTHER ZINC FINGER PROTEIN WIP2 24 292 IPR043584 GO:0003700|GO:0010468
Vifa1g02297 304 FunFam Zinc finger protein WIP2 194 276 - -
Vifa1g02297 304 SUPERFAMILY beta-beta-alpha zinc fingers 211 245 IPR036236 -
Vifa1g02297 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 168 IPR013087 -
Vifa1g02297 304 MobiDBLite consensus disorder prediction 269 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02297 Vifa-Chr1 369219423 369221055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02297 8 294 C2H2 Transcription Factor Family AT1G08290 56.418 2.99e-124 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa1g02297 zf-C2H2_6 0.00013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02297 - - tpra:123899635 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02297 1 369219423 369221055 Vifa1g02297 1 369219423 369221055 ECH
Vifa1g02297 1 369219423 369221055 Vifa6g00376 6 153265801 153267852 PCT