Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02295 ATGGGAGATACCAACTTTACTAAAGAGGAAGATAACAAAACCAATGTCTCCTCTGAAGACAGTGCTTGCCTTTCAGCAATGGTACTTACCACTAATCTTGTTTATCCTGCTGTCTTAAATGCTGCTGTTCATCTCAATTTATTTGAGATTATTTCTAATGCAACACCCCCTGGTGCTTTCATCTCCCCATCACAAATTGCTTCTCATCTCCCATCATCAACCCAACACTACGACTTCACTGAGATTGTCTATGGACTTTCGTCGGTAGGAAAATACCTTGTCCCTGATGAAACTAGAGGCTACTTGGCTTCATTCACTACATTTCTATGTTATCCTGCATTGTTACAAGTTTGGATGAATTTTAAGGAAGCAGTGGTTGATGAAGACATTGATTTGTTCAAGAAAGTACATGGAGTGACAAAGTATGAATACATGGGACAAGATAAAAAAATGAACCAAGTATTTAACAAGTCAATGGTTGATGTATGTGCAACGGAGATGAAAAGAATGCTTGAAATATACACTGGATTTGATGGAATATCAACATTGGTTGATGTTGGAGGTGGAAGTGGACAAAATCTGAAAATGATTATATCCAAATATCCATCAATTAAGGGAATTAATTTTGATCTGCCACAGGTTATTGAGAACGCACCACCAATTCCAGGTATTCACCATGTTGGAGGAGATATGTTTCAAAGTGTTCCACAAGGTGATGCCATCATACTAAAAGCTGTATGTCATAATTGGTCTGATCATAAATGCATTCAATTTTTAACCATTTGTCACAAAGCATTGTCACCAAATGGGAAAGTCATTCTTGTGGAATTCATATTGCCAGAACAACCAACATCAACTCAAGAATCAAAACTTGTTTCAACTCTTGACAATCTCATGTTTATCACTGTTGGTGGAAGGGAAAGAACTCAGAAACAATATCAGAATTTGGGAAAACTCTCTGGATTTTCCAAATTCCATGTTGCTTGCCGTGCTTTCTCTTGTTTAGGAGTCATTGAACTTTACAAATGA 1029 0.3712 MGDTNFTKEEDNKTNVSSEDSACLSAMVLTTNLVYPAVLNAAVHLNLFEIISNATPPGAFISPSQIASHLPSSTQHYDFTEIVYGLSSVGKYLVPDETRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKKVHGVTKYEYMGQDKKMNQVFNKSMVDVCATEMKRMLEIYTGFDGISTLVDVGGGSGQNLKMIISKYPSIKGINFDLPQVIENAPPIPGIHHVGGDMFQSVPQGDAIILKAVCHNWSDHKCIQFLTICHKALSPNGKVILVEFILPEQPTSTQESKLVSTLDNLMFITVGGRERTQKQYQNLGKLSGFSKFHVACRAFSCLGVIELYK 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02295 342 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 342 IPR016461 GO:0008168
Vifa1g02295 342 FunFam Caffeic acid O-methyltransferase 96 342 - -
Vifa1g02295 342 PIRSF O-mtase 72 342 IPR016461 GO:0008168
Vifa1g02295 342 PIRSF O-mtase 4 80 IPR016461 GO:0008168
Vifa1g02295 342 CDD AdoMet_MTases 182 279 - -
Vifa1g02295 342 PANTHER O-METHYLTRANSFERASE 26 325 IPR016461 GO:0008168
Vifa1g02295 342 Gene3D - 34 170 IPR036388 -
Vifa1g02295 342 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 101 339 IPR029063 -
Vifa1g02295 342 Gene3D Vaccinia Virus protein VP39 152 331 IPR029063 -
Vifa1g02295 342 Pfam O-methyltransferase domain 118 323 IPR001077 GO:0008171
Vifa1g02295 342 Pfam Dimerisation domain 38 75 IPR012967 GO:0046983
Vifa1g02295 342 SUPERFAMILY "Winged helix" DNA-binding domain 18 97 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02295 Vifa-Chr1 368124947 368126129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02295 18 342 Monolignol Biosynthesis Gene Families AT5G54160 42.898 1.07e-93 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02295 - - ag:AAB48059 565.074