Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02287 ATGGACACTAACAACAACACTCATCATATGACAAATGCAGCAGAAAAAAGAAACAATTTTTACAGGCTATTCTTCATTTTCATCATCTGGGTCCATTTCATAATGAACCGAGTTTCATGTGAAGAACATTGGGATGGGGTTGTTGTTACACAGTCAAATTTCCTAGCACTTCAAGCCTTCAAACAAGAGCTTATTGATCCAAAAGGGTTCTTGAAAACATGGAACGACAGTGGCTTTGGAGCATGTTCAGGAGCTTGGGTTGGAATCAAGTGTGCTCAAGGACAAGTCATTGTGATCCAGCTTCCATGGAAAGGGTTAAAGGGACAAATCACTGAAAGAATTGGCCAACTTCAAGGTCTTAGAAAGCTTAGTCTTCATAACAACCACATTACTGGCTCAATCCCTTCATCATTAGGACTTCTTAACAATCTAAGAGGAGTTCAGCTTTTCAACAACAGGTTAACAGGTTCAATCCCTTCTTCATTAGGTTCTTGTCCTTTGCTTCAATCTTTGGACTTCGGTAACAATTTGCTCACAGGTGAAATCCCTGAGAGCCTTGGAAATTCTACTAAGCTTTATTGGCTTAACTTGAGCTTCAATTCTTTGTCTGGTTCAATACCAACTAGTCTCACTAGTTTGAATTCTCTCACTTTTATATCCCTTCAACATAATAATCTCTCAGGTTCTATTCCTAGTTTGAAAAATGGATTATTTAACCTTCAAAATCTTGTCTTGGATCATAACTTCTTGACTGGAACCATTCCTGGTTCTTTAGGTAATTTAAGGGAGATTAGAGAGATTTCTCTTGGTCATAATCAATTTAGTGGTCACATTCCTCAAAGTATTGGAAAAATTTCAAATCTTAAACAGCTTGATTTGTCATTGAATAATCTCAGTGGAGAAATTCCTGTCTCTTTTGACAATCTACTTATTCTTAGTTTCTTCAATGTTTCTTATAATAATCTCTCTGGTCCTGTACCATCTTTACTAGCACAGAAATTTAACTCAACCTCATTTGTGGGAAATTTTCAACTATGTGGTTATAGTCCTTCAACTCAATGTTCCTCTCCAGCTCCTTCGGAAGGACAAGGTGCACCTTCTGAATCATCGAAACATCGGCATCGTAAGAAACTAGGTACCAAAGACATAATCCTCATAGTAGCAGGAGTGCTACTTGTAGTCCTAATAACAGTCTGCTGTATCCTGCTCTTCTGCCTGTTCCAGAAGAGAAAATCATCGAATGCCGAGGAGGGGCACGTTACTGCGAGATCAGCAGCAGCTGCTGCCAGGACCGGAAAAGGAGTCCCTCCTATCGGCGGAGAAGTTGAAGCGGGCGGGGATGCTGGAGGCAAACTAGTACATTTTGATGGACCGCTCGCGTTTACAGCCGACGATCTTTTGTGTGCAACAGCTGAGATAATGGGAAAGAGCACCTATGGAACAGTGTATAAGGCAACATTAGAAGATGGTAGTCAAGCTGCAGTGAAAAGATTGAGGGAAAAAATCACTAAGAATCAGAGAGAATTTGAATCTGAAGTTAGTGTTTTAGGGAGAGTTAGACATGAAAATCTTTTGGCACTGAGAGCCTATTACTTAGGACCTAAGGGAGAAAAGCTTCTGGTTTTTGATTACATGCCTAAAGGAAGTCTTGCTTCTTTCCTACATGCTCATGGACCTGAAACAAGAATTGATTGGGCAACAAGGATGAACATAGCACAAGGCATGGCTCGTGGCATGTTATACCTACATTCACACGAAAACATCATACATGGGAACCTAACTTCAAGCAATGTGTTACTTGATGAGAACACAAATGCGAAAATAGCAGACTTTGGTCTATCAAGGTTGATGACAACAGCTGCTAACTCTAATGTGATTGCCACGGCGGGTGCATTAGGATACCGAGCACCCGAGCTATCGAAGCTAAAGAAAGCGAACACGAAAACTGATGTATACAGTCTTGGTGTAATCTTGTTAGAGCTACTAACAAGGAAGCCACCTGGTGAGGCAATGAATGGTGTTGATCTACCTCAATGGGTTGCATCTATTGTTAAAGAGGAGTGGGCAAATGAGGTTTTTGATGTTGATTTGTTGAGAGATTCGTCTACAAATGGTGATGAGTTGTTGAACACTTTGAAGCTTGCTTTGCATTGTGTTGATCCTTCTCCATCAGCACGGCCAGAAGTTCAGCTGATACTTCAACAGCTAGAAGAGATTAGACCACAGATGGTATCATCAGGTATTTCTAGTGATGAGGGAGCCATTCCTACAAGTGAATAA 2280 0.4066 MDTNNNTHHMTNAAEKRNNFYRLFFIFIIWVHFIMNRVSCEEHWDGVVVTQSNFLALQAFKQELIDPKGFLKTWNDSGFGACSGAWVGIKCAQGQVIVIQLPWKGLKGQITERIGQLQGLRKLSLHNNHITGSIPSSLGLLNNLRGVQLFNNRLTGSIPSSLGSCPLLQSLDFGNNLLTGEIPESLGNSTKLYWLNLSFNSLSGSIPTSLTSLNSLTFISLQHNNLSGSIPSLKNGLFNLQNLVLDHNFLTGTIPGSLGNLREIREISLGHNQFSGHIPQSIGKISNLKQLDLSLNNLSGEIPVSFDNLLILSFFNVSYNNLSGPVPSLLAQKFNSTSFVGNFQLCGYSPSTQCSSPAPSEGQGAPSESSKHRHRKKLGTKDIILIVAGVLLVVLITVCCILLFCLFQKRKSSNAEEGHVTARSAAAAARTGKGVPPIGGEVEAGGDAGGKLVHFDGPLAFTADDLLCATAEIMGKSTYGTVYKATLEDGSQAAVKRLREKITKNQREFESEVSVLGRVRHENLLALRAYYLGPKGEKLLVFDYMPKGSLASFLHAHGPETRIDWATRMNIAQGMARGMLYLHSHENIIHGNLTSSNVLLDENTNAKIADFGLSRLMTTAANSNVIATAGALGYRAPELSKLKKANTKTDVYSLGVILLELLTRKPPGEAMNGVDLPQWVASIVKEEWANEVFDVDLLRDSSTNGDELLNTLKLALHCVDPSPSARPEVQLILQQLEEIRPQMVSSGISSDEGAIPTSE 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02287 759 FunFam Leucine-rich repeat receptor-like protein kinase 453 544 - -
Vifa1g02287 759 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 178 739 - -
Vifa1g02287 759 CDD STKc_IRAK 474 739 - -
Vifa1g02287 759 Gene3D Ribonuclease Inhibitor 48 354 IPR032675 -
Vifa1g02287 759 MobiDBLite consensus disorder prediction 354 374 - -
Vifa1g02287 759 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 231 354 - -
Vifa1g02287 759 Pfam Protein tyrosine and serine/threonine kinase 471 736 IPR001245 GO:0004672|GO:0006468
Vifa1g02287 759 Gene3D Transferase(Phosphotransferase) domain 1 546 752 - -
Vifa1g02287 759 Pfam Leucine rich repeat N-terminal domain 55 91 IPR013210 -
Vifa1g02287 759 ProSiteProfiles Leucine-rich repeat profile. 119 141 IPR001611 GO:0005515
Vifa1g02287 759 Pfam Leucine rich repeat 239 298 IPR001611 GO:0005515
Vifa1g02287 759 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 545 744 - -
Vifa1g02287 759 SUPERFAMILY L domain-like 52 346 - -
Vifa1g02287 759 SUPERFAMILY Protein kinase-like (PK-like) 472 741 IPR011009 -
Vifa1g02287 759 Gene3D Phosphorylase Kinase; domain 1 474 545 - -
Vifa1g02287 759 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 50 211 - -
Vifa1g02287 759 ProSiteProfiles Protein kinase domain profile. 468 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02287 Vifa-Chr1 367677182 367679668 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02287 44 741 Receptor kinase-like Gene Family AT3G51740 57.381 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa1g02287 PK_Tyr_Ser-Thr 2.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02287 - - twl:120012031 996.497