Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02281 ATGACATTGACCTTATTCACAAACATGAACCACATTGACACACTTCTCAATGCACCTAACACCTATACAACACACAACCAAAAAAGATGGCACAATGCTTTCATCACAATCTACTGTTCTAGAGCTTTCAACTCACTTTTTACCAACAAACCTAAAATCACATCCACCCCATCTTTCACTCTCCTTGATATCAATTCACCTCACTCTTTTACCATTGATCAACTAACTCTCATTCATCTTCTCAAACACAAAAACATTGAAACCCTTCAAAAATATGATGGAGGAGTTCAAGGTATTGCTGCATCTCTTCAAACCAACACTGAGTTTGGTATCCATCATGACTCTGAAGACATTGCAATCAGAAAACAAGTGTTTGGTTCCAACACATACAATAAACCACCTTCTAAAAGTTTCATTCACTTTGTTCTTGAAGCATTTAAGGATGTGACGATTCTAATCCTTTTGGTTTGTGCTTCTCTTTCACTTGGCTTTGGTATCAAAGAACATGGAATCAAACAAGGTTGGTATGACGGTGGTAGCATTTTTCTTGCTGTTTTCATTGTTATTTCAATGTCATCCATAAGTAACTTCAAACAAAACAAACAATTTGATAAACTGTCTCAAGTTAGCAATGACATTCAAATTGATTTGGTTCGAAGTGGTCGCAGACAAAAGGTATCAATCTTTGAGATTGTTGTTGGTGATATTGTTTGTTTGAAAATTGGTGATCAAGTACCGGCCGATGGATTGTTCGTAGATGGACATTCACTCAGAGTTGATGAATCCAGCATGACCGTTACATCGGTCGGTATGAACACAACATGGGGACAGATGATGAGCTCTATAAGCAATGACAATGATGAAGAAACACCTTTGCAGACAAGGTTGAATAAGCTAACATCATCTATCGGAAAGGGTGGTTTGGCTGTGGCGTTTTTAGTTCTTGTTGTGTTGCTGATTCGATACTTCACCGGGAACACAAAGACGGATAATGGAGTTCGAGAATTTAATGGAAGAAAGACTAGTTTTGATGAAGTGATGAATGCAGTGATTGGAATTATTTCTGATGCTGTTACTATTGTTGTTGTTGCAATCCCTGAGGGCTTGCCATTAGCAGTGACTTTGACTCTTGCTTATTCAATGAAGAAAATGATGGCTGATCAAGCTATGGTCAGAAAACTTTCTGCATGTGAGACTATGGGATCTGCTACTACTATTTGCACTGATAAAACAGGTACACTCACTTTGAATCAGATGAAGGTGACAAAATTTTGGCTTGGTTTAGAACCACTGGAAGATGGTGCATATTTAAATGTTGATCCATTTGTTCTTCAATTGATCAAAGAAGGAGTTGCTCATAATACAACCGGTGGAGTTCATGAATCTAAATCAGTTTCTGATTCAAAATTTGAATTTTCTGGTAGTCCAACAGAAAAGGCAATATTATCTTGGGCTGTTTTGGAATTGAATATGGAGATGGAAACTTTGACAAAAAGTTGCTCTATTCTTCAAGTTGAGACTTTCAACTCAAAGAAGAAAAGGAGTGGAGTTTTGTTGAAAAGAAATGTTGACAACAAAATTAATGCACACTGGAAAGGAGCAGCAGAGATGGTACTGAGAATGTGCTCAAAATACTATGATGCTTATGGCATTGTGAAATATCTTGACAATGAAACCATGTCGAAATTCGAAAGCATTATTCAAGGTATGGCAGCTAGTAGTCTTCGTTGCATCGCTTTCGCATATGCTGAAGTTGATGTTCAAGAGCTAGGAGATGAACGAGAAAACAGCGGGATAGTGGTAAAAGACAATGGTTTAACATTGTTAGGACTTGTTGGTATTAAGGATCCGTGTCGTCCTGGGGTGAAGACTGCGGTGGAAGCTTGCCAACATGCTGGTGTGAATGTTAAAATGATTACAGGTGACAATATTTTCACTGCAAAAGCTATAGCATTTGAATGTGGGATTCTTCAAGCTAATCAAGACTCAGATGAAACCGTGGTTGAAGGCGAACAATTTCGCAACTTCACGCACGAAGAAAGGTTAGAGAAAGTTGAAAAAATCAGTGTGATGGCAAGATCTTCTCCATTTGACAAACTTCTAATGGTTCAATGCTTAAAAGAAAAAGGGCATGTAGTTGCTGTAACAGGAGATGGTACTAATGATGCACCGGCATTGAAAGAAGCTGATATTGGACTTTCAATGGGAATTCAAGGTACAGAAGTTGCAAAAGAGAGTTCAGATATTGTTATATTAGATGACAATTTTGCATCTATAGTAACAGTTTTAAATTGGGGAAGATGTGTTTACAACAACATCCAAAAATTCATTCAATTTCAACTAACAGTGAATGTAGCTGCACTTGTTATCAATTTTGTAGCAGCAGTTTCAGCAGGTGAAGTTCCATTAACAGCAGTTCAATTATTATGGGTCAATTTGATTATGGATACATTAGGTGCTTTGGCTCTTGCAACTGAAAAACCTACTAAGGAATTGATGGATCAAAAACCTGTGGGTAGAACAAAACCTCTTATCACTAACATTATGTGGAGGAATCTTCTGTCACAAGCTATCTACCAAATAGTAATTTTGTTGACTCTACAATTTAAAGGGGAAACTATTTTTGGTGTGACATCAAAGGTAAATGACACATTGATTTTTAATACATTTGTTCTTTGTCAAGTGTTTAATGAGTTCAATGCAAGGAAGTTGGAGAAGAAGAACGTTTTTGAAGGGATATTTAAAAGCAAATTGTTTATGGGAATAGTTGGTGTGACATTGGTGCTTCAAGTAGTGATGGTTGAGTTTTTGAAGAAATTTGCTGATACAGAGAGATTGAATTGGAGAGAATGGATAATTTGTATTGGTCTTGCTTCTGCTTCTTGGCCAATTGGTTTTGTTGTGAAGTTGATACCAGTTTCAGATAAACCATTACTTGATTTTCTGAGTGTGAAGAAGAGATTATGA 2967 0.3697 MTLTLFTNMNHIDTLLNAPNTYTTHNQKRWHNAFITIYCSRAFNSLFTNKPKITSTPSFTLLDINSPHSFTIDQLTLIHLLKHKNIETLQKYDGGVQGIAASLQTNTEFGIHHDSEDIAIRKQVFGSNTYNKPPSKSFIHFVLEAFKDVTILILLVCASLSLGFGIKEHGIKQGWYDGGSIFLAVFIVISMSSISNFKQNKQFDKLSQVSNDIQIDLVRSGRRQKVSIFEIVVGDIVCLKIGDQVPADGLFVDGHSLRVDESSMTVTSVGMNTTWGQMMSSISNDNDEETPLQTRLNKLTSSIGKGGLAVAFLVLVVLLIRYFTGNTKTDNGVREFNGRKTSFDEVMNAVIGIISDAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTKFWLGLEPLEDGAYLNVDPFVLQLIKEGVAHNTTGGVHESKSVSDSKFEFSGSPTEKAILSWAVLELNMEMETLTKSCSILQVETFNSKKKRSGVLLKRNVDNKINAHWKGAAEMVLRMCSKYYDAYGIVKYLDNETMSKFESIIQGMAASSLRCIAFAYAEVDVQELGDERENSGIVVKDNGLTLLGLVGIKDPCRPGVKTAVEACQHAGVNVKMITGDNIFTAKAIAFECGILQANQDSDETVVEGEQFRNFTHEERLEKVEKISVMARSSPFDKLLMVQCLKEKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASIVTVLNWGRCVYNNIQKFIQFQLTVNVAALVINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTKELMDQKPVGRTKPLITNIMWRNLLSQAIYQIVILLTLQFKGETIFGVTSKVNDTLIFNTFVLCQVFNEFNARKLEKKNVFEGIFKSKLFMGIVGVTLVLQVVMVEFLKKFADTERLNWREWIICIGLASASWPIGFVVKLIPVSDKPLLDFLSVKKRL 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02281 988 Pfam Cation transporter/ATPase, N-terminus 93 161 IPR004014 -
Vifa1g02281 988 Gene3D - 266 283 - -
Vifa1g02281 988 SFLD Haloacid Dehalogenase 389 769 - -
Vifa1g02281 988 SUPERFAMILY Calcium ATPase, transmembrane domain M 93 973 IPR023298 -
Vifa1g02281 988 ProSitePatterns E1-E2 ATPases phosphorylation site. 409 415 IPR018303 -
Vifa1g02281 988 SFLD p-type atpase 389 769 IPR044492 -
Vifa1g02281 988 FunFam Calcium-transporting ATPase 417 617 - -
Vifa1g02281 988 FunFam Calcium-transporting ATPase 733 975 - -
Vifa1g02281 988 SUPERFAMILY HAD-like 405 821 IPR036412 -
Vifa1g02281 988 Gene3D - 404 761 IPR023214 -
Vifa1g02281 988 Gene3D - 417 617 IPR023299 GO:0000166
Vifa1g02281 988 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 414 614 IPR023299 GO:0000166
Vifa1g02281 988 Pfam Cation transporting ATPase, C-terminus 801 971 IPR006068 -
Vifa1g02281 988 PRINTS P-type cation-transporting ATPase superfamily signature 260 274 - -
Vifa1g02281 988 PRINTS P-type cation-transporting ATPase superfamily signature 716 735 - -
Vifa1g02281 988 PRINTS P-type cation-transporting ATPase superfamily signature 610 621 - -
Vifa1g02281 988 PRINTS P-type cation-transporting ATPase superfamily signature 407 421 - -
Vifa1g02281 988 PRINTS P-type cation-transporting ATPase superfamily signature 740 752 - -
Vifa1g02281 988 PRINTS P-type cation-transporting ATPase superfamily signature 632 642 - -
Vifa1g02281 988 FunFam Calcium-transporting ATPase 611 761 - -
Vifa1g02281 988 Gene3D - 115 265 - -
Vifa1g02281 988 SMART Cation_ATPase_N_a_2 90 166 IPR004014 -
Vifa1g02281 988 NCBIfam calcium-translocating P-type ATPase, PMCA-type 264 973 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vifa1g02281 988 PANTHER CATION TRANSPORTING ATPASE 56 974 - -
Vifa1g02281 988 Pfam E1-E2 ATPase 214 265 - -
Vifa1g02281 988 Pfam E1-E2 ATPase 264 385 - -
Vifa1g02281 988 SUPERFAMILY Calcium ATPase, transduction domain A 215 281 IPR008250 -
Vifa1g02281 988 PRINTS H+-transporting ATPase (proton pump) signature 716 732 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g02281 988 PRINTS H+-transporting ATPase (proton pump) signature 748 773 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g02281 988 PRINTS H+-transporting ATPase (proton pump) signature 563 581 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g02281 988 Pfam haloacid dehalogenase-like hydrolase 404 730 - -
Vifa1g02281 988 NCBIfam HAD-IC family P-type ATPase 687 797 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g02281 988 NCBIfam HAD-IC family P-type ATPase 350 427 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g02281 988 Gene3D - 144 199 - -
Vifa1g02281 988 Gene3D - 284 964 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02281 Vifa-Chr1 366817783 366821107 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02281 12 987 Primary Pumps ATPases AT3G22910 64.503 0.0 1230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02281 K01537 - gmx:100793918 1530.38