Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02280 ATGACATTGACCTTATTCACAAACATGAACCACATTGACACACTTCTCAATGCACCTAACACCTATACAACACACAACCAAAAAAGATGGCACAATGCTTTCATCACAATCTACTGTTCTAGAGCTTTCAACTCACTTTTTACCAACAAACCTAAAATCACATCCACCCCATCTTTCACTCTCCTTGATATCAATTCACCTCACTCTTTTACCATTGATCAACTAACTCTCATTCATCTTCTCAAACACAAAAACATTGAAACCCTTCAAAAATATGATGGAGGAGTTCAAGGTATTGCTGCATCTCTTCAAACCAACACTGAGTTTGGTATCCATCATGACTCTGAAGACATTGCAATCAGAAAACAAGTGTTTGGTTCCAACACATACAATAAACCACCTTCTAAAAGTTTCATTCACTTTGTTCTTGAAGCATTTAAGGATGTGACGATTCTAATCCTTTTGGTTTGTGCTTCTCTTTCACTTGGCTTTGGTATCAAAGAACATGGAATCAAACAAGGTTGGTATGACGGTGGTAGCATTTTTCTTGCTGTTTTCATTGTTATTTCAATGTCATCCATAAGTAACTTCAAACAAAACAAACAATTTGATAAACTGTCTCAAGTTAGCAATGACATTCAAATTGATTTGGTTCGAAGTGGTCGCAGACAAAAGGTATCAATCTTTGAGATTGTTGTTGGTGATATTGTTTGTTTGAAAATTGGTGATCAAGTACCGGCCGATGGATTGTTCGTAGATGGACATTCACTCAGAGTTGATGAATCCAGCATGACCGGTGAGAGCGATCATGTAGAGATTAGTAAACTCCATCATCCTTTTTTGTTTTCCGGTACAAAAGTTGCTGACGGATATGCCAAAATGCTAGTTACATCGGTCGGTATGAACACAACATGGGGACAGATGATGAGCTCTATAAGCAATGACAATGATGAAGAAACACCTTTGCAGACAAGGTTGAATAAGCTAACATCATCTATCGGAAAGGGTGGTTTGGCTGTGGCGTTTTTAGTTCTTGTTGTGTTGCTGATTCGATACTTCACCGGGAACACAAAGACGGATAATGGAGTTCGAGAATTTAATGGAAGAAAGACTAGTTTTGATGAAGTGATGAATGCAGTGATTGGAATTATTTCTGATGCTGTTACTATTGTTGTTGTTGCAATCCCTGAGGGCTTGCCATTAGCAGTGACTTTGACTCTTGCTTATTCAATGAAGAAAATGATGGCTGATCAAGCTATGGTCAGAAAACTTTCTGCATGTGAGACTATGGGATCTGCTACTACTATTTGCACTGATAAAACAGGTACACTCACTTTGAATCAGATGAAGGTGACAAAATTTTGGCTTGGTTTAGAACCACTGGAAGATGGTGCATATTTAAATGTTGATCCATTTGTTCTTCAATTGATCAAAGAAGGAGTTGCTCATAATACAACCGGTGGAGTTCATGAATCTAAATCAGTTTCTGATTCAAAATTTGAATTTTCTGGTAGTCCAACAGAAAAGGCAATATTATCTTGGGCTGTTTTGGAATTGAATATGGAGATGGAAACTTTGACAAAAAGTTGCTCTATTCTTCAAGTTGAGACTTTCAACTCAAAGAAGAAAAGGAGTGGAGTTTTGTTGAAAAGAAATGTTGACAACAAAATTAATGCACACTGGAAAGGAGCAGCAGAGATGGTACTGAGAATGTGCTCAAAATACTATGATGCTTATGGCATTGTGAAATATCTTGACAATGAAACCATGTCGAAATTCGAAAGCATTATTCAAGGTATGGCAGCTAGTAGTCTTCGTTGCATCGCTTTCGCATATGCTGAAGTTGATGTTCAAGAGCTAGGAGATGAACGAGAAAACAGCGGGATAGTGGTAAAAGACAATGGTTTAACATTGTTAGGACTTGTTGGTATTAAGGATCCGTGTCGTCCTGGGGTGAAGACTGCGGTGGAAGCTTGCCAACATGCTGGTGTGAATGTTAAAATGATTACAGGTGACAATATTTTCACTGCAAAAGCTATAGCATTTGAATGTGGGATTCTTCAAGCTAATCAAGACTCAGATGAAACCGTGGTTGAAGGCGAACAATTTCGCAACTTCACGCACGAAGAAAGGTTAGAGAAAGTTGAAAAAATCAGTGTGATGGCAAGATCTTCTCCATTTGACAAACTTCTAATGGTTCAATGCTTAAAAGAAAAAGGGCATGTAGTTGCTGTAACAGGAGATGGTACTAATGATGCACCGGCATTGAAAGAAGCTGATATTGGACTTTCAATGGGAATTCAAGGTACAGAAGTTGCAAAAGAGAGTTCAGATATTGTTATATTAGATGACAATTTTGCATCTATAGTAACAGTTTTAAATTGGGGAAGATGTGTTTACAACAACATCCAAAAATTCATTCAATTTCAACTAACAGTGAATGTAGCTGCACTTGTTATCAATTTTGTAGCAGCAGTTTCAGCAGGTGAAGTTCCATTAACAGCAGTTCAATTATTATGGGTCAATTTGATTATGGATACATTAGGTGCTTTGGCTCTTGCAACTGAAAAACCTACTAAGGAATTGATGGATCAAAAACCTGTGGGTAGAACAAAACCTCTTATCACTAACATTATGTGGAGGAATCTTCTGTCACAAGCTATCTACCAAATAGTAATTTTGTTGACTCTACAATTTAAAGGGGAAACTATTTTTGGTGTGACATCAAAGGTAAATGACACATTGATTTTTAATACATTTGTTCTTTGTCAAGTGTTTAATGAGTTCAATGCAAGGAAGTTGGAGAAGAAGAACGTTTTTGAAGGGATATTTAAAAGCAAATTGTTTATGGGAATAGTTGGTGTGACATTGGTGCTTCAAGTAGTGATGGTTGAGTTTTTGAAGAAATTTGCTGATACAGAGAGATTGAATTGGAGAGAATGGATAATTTGTATTGGTCTTGCTTCTGCTTCTTGGCCAATTGGTTTTGTTGTGAAGTTGATACCAGTTTCAGATAAACCATTACTTGATTTTCTGAGTGTGAAGAAGAGATTATGA 3057 0.3706 MTLTLFTNMNHIDTLLNAPNTYTTHNQKRWHNAFITIYCSRAFNSLFTNKPKITSTPSFTLLDINSPHSFTIDQLTLIHLLKHKNIETLQKYDGGVQGIAASLQTNTEFGIHHDSEDIAIRKQVFGSNTYNKPPSKSFIHFVLEAFKDVTILILLVCASLSLGFGIKEHGIKQGWYDGGSIFLAVFIVISMSSISNFKQNKQFDKLSQVSNDIQIDLVRSGRRQKVSIFEIVVGDIVCLKIGDQVPADGLFVDGHSLRVDESSMTGESDHVEISKLHHPFLFSGTKVADGYAKMLVTSVGMNTTWGQMMSSISNDNDEETPLQTRLNKLTSSIGKGGLAVAFLVLVVLLIRYFTGNTKTDNGVREFNGRKTSFDEVMNAVIGIISDAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTKFWLGLEPLEDGAYLNVDPFVLQLIKEGVAHNTTGGVHESKSVSDSKFEFSGSPTEKAILSWAVLELNMEMETLTKSCSILQVETFNSKKKRSGVLLKRNVDNKINAHWKGAAEMVLRMCSKYYDAYGIVKYLDNETMSKFESIIQGMAASSLRCIAFAYAEVDVQELGDERENSGIVVKDNGLTLLGLVGIKDPCRPGVKTAVEACQHAGVNVKMITGDNIFTAKAIAFECGILQANQDSDETVVEGEQFRNFTHEERLEKVEKISVMARSSPFDKLLMVQCLKEKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASIVTVLNWGRCVYNNIQKFIQFQLTVNVAALVINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTKELMDQKPVGRTKPLITNIMWRNLLSQAIYQIVILLTLQFKGETIFGVTSKVNDTLIFNTFVLCQVFNEFNARKLEKKNVFEGIFKSKLFMGIVGVTLVLQVVMVEFLKKFADTERLNWREWIICIGLASASWPIGFVVKLIPVSDKPLLDFLSVKKRL 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02280 1018 ProSitePatterns E1-E2 ATPases phosphorylation site. 439 445 IPR018303 -
Vifa1g02280 1018 Gene3D - 434 791 IPR023214 -
Vifa1g02280 1018 CDD P-type_ATPase_Ca_PMCA-like 121 879 - -
Vifa1g02280 1018 Pfam Cation transporting ATPase, C-terminus 831 1001 IPR006068 -
Vifa1g02280 1018 Gene3D - 144 994 - -
Vifa1g02280 1018 Gene3D - 447 647 IPR023299 GO:0000166
Vifa1g02280 1018 Gene3D - 115 313 - -
Vifa1g02280 1018 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 444 644 IPR023299 GO:0000166
Vifa1g02280 1018 SUPERFAMILY Calcium ATPase, transmembrane domain M 93 1003 IPR023298 -
Vifa1g02280 1018 PANTHER CATION TRANSPORTING ATPASE 56 1004 - -
Vifa1g02280 1018 FunFam Calcium-transporting ATPase 641 791 - -
Vifa1g02280 1018 PRINTS H+-transporting ATPase (proton pump) signature 593 611 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g02280 1018 PRINTS H+-transporting ATPase (proton pump) signature 778 803 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g02280 1018 PRINTS H+-transporting ATPase (proton pump) signature 746 762 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g02280 1018 NCBIfam HAD-IC family P-type ATPase 717 827 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g02280 1018 NCBIfam HAD-IC family P-type ATPase 380 457 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g02280 1018 FunFam Calcium-transporting ATPase 185 313 - -
Vifa1g02280 1018 Pfam E1-E2 ATPase 214 415 - -
Vifa1g02280 1018 SFLD p-type atpase 419 799 IPR044492 -
Vifa1g02280 1018 SFLD C1.7: P-type atpase like 419 799 - -
Vifa1g02280 1018 SMART Cation_ATPase_N_a_2 90 166 IPR004014 -
Vifa1g02280 1018 FunFam Calcium-transporting ATPase 763 1005 - -
Vifa1g02280 1018 Pfam Cation transporter/ATPase, N-terminus 93 161 IPR004014 -
Vifa1g02280 1018 Pfam haloacid dehalogenase-like hydrolase 434 760 - -
Vifa1g02280 1018 FunFam Calcium-transporting ATPase 447 647 - -
Vifa1g02280 1018 NCBIfam calcium-translocating P-type ATPase, PMCA-type 71 1003 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vifa1g02280 1018 SUPERFAMILY Calcium ATPase, transduction domain A 215 311 IPR008250 -
Vifa1g02280 1018 PRINTS P-type cation-transporting ATPase superfamily signature 770 782 - -
Vifa1g02280 1018 PRINTS P-type cation-transporting ATPase superfamily signature 437 451 - -
Vifa1g02280 1018 PRINTS P-type cation-transporting ATPase superfamily signature 640 651 - -
Vifa1g02280 1018 PRINTS P-type cation-transporting ATPase superfamily signature 746 765 - -
Vifa1g02280 1018 PRINTS P-type cation-transporting ATPase superfamily signature 662 672 - -
Vifa1g02280 1018 PRINTS P-type cation-transporting ATPase superfamily signature 260 274 - -
Vifa1g02280 1018 SUPERFAMILY HAD-like 435 851 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02280 Vifa-Chr1 366817783 366821107 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02280 12 1017 Primary Pumps ATPases AT3G22910 66.470 0.0 1287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02280 K01537 - gmx:100793918 1601.26