Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02276 ATGGGTGCTACTGTTTATGATCAAAGTTTTAATGTTAATCTTGCGCCTTTGGAACCATCTAGAAAGAGGAAAACTAGGAGTAGAGGAAAGGGGAGTAAATCTGTGGCTGAGATTCTGGCGAAGTGGAGGGAGTATAATGAACATCTTTATGCAGAGGGTGGTAAACCGAAGCGTAAAGCGCCGGCGAAAGGTTCCAAGAAAGGGTGTATGAAAGGGAAAGGAGGGCCTCAGAATTCGGAGAATAGATATAGAGGTGTTAGACAGAGGACTTGGGGGAAATGGGTTGCTGAGATTAGGGAACCGAATAGAGGTAGTAGGCTTTGGTTAGGTACTTTTCCTACTGCTCAAGAAGCTGCTCTGGCTTATGATTATGCTGCTAGAGCTATGTATGGGCCTTCGGCGCGGCTTAATTTTCCTCATATATCGGATTATAGTTCTATTAGTGAGTCTTTGAAGGACTCTTCTTCCTTGCCTGCTGATAGCTGTCCTTGTTCTTCAGTGGCAACATCTGAAACTGCGTCTAGTCATTCTGAGGTTTGTGCCTTTGATGATGTAAAGGAGAAACCTAAACTACCTGTGTATATGAACAATACTTTTGATGTTTTTCGTAAAGATTATGAAGCTTCATCTCCAACTAGTAGAATGAAGCAAGAGCCAAAGGATGAGCATATTCATATAATAGACCCTGGTATTGGTGAAATCAAAGATGCTAAATCAGAAGGAAGACAAACACGAACACAGACAGAGACACATGATGTTGTGCAGGTTGAAGAAGGTGTATGTAATAATGACCAGATGGATCTATCATGGATTGATAACTTTGACTTCAATGGTGATTGCTTAAAGAATTTTACCCTGGATGAGTTTTTTCATGTGGATGAGCTTTTGGGACATATAGACAATAATCCGATAACCGATGAACATGGGTTGATGCAAGGTTTGGATTTTGGACAAATGGGTTTTCCTGAAGAAAACAATCCTCAGGTTGGAACTGGAACTGAAACTACTTCAAGCTTCTTTTATGAATTGGAAAATCCAGATGCTAAGCTATTGGGAAGTTTGCCTCATATGGAGGAAAACACAACATCAGGTGTTGATTTTGGATTAGATTTCTTAAAATCAGAAGAACCTGGGAACTATAATGATGCACTTGGAGATACACTGTTTCCTGTTCTGGATATTATGATGTGA 1191 0.4039 MGATVYDQSFNVNLAPLEPSRKRKTRSRGKGSKSVAEILAKWREYNEHLYAEGGKPKRKAPAKGSKKGCMKGKGGPQNSENRYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAQEAALAYDYAARAMYGPSARLNFPHISDYSSISESLKDSSSLPADSCPCSSVATSETASSHSEVCAFDDVKEKPKLPVYMNNTFDVFRKDYEASSPTSRMKQEPKDEHIHIIDPGIGEIKDAKSEGRQTRTQTETHDVVQVEEGVCNNDQMDLSWIDNFDFNGDCLKNFTLDEFFHVDELLGHIDNNPITDEHGLMQGLDFGQMGFPEENNPQVGTGTETTSSFFYELENPDAKLLGSLPHMEENTTSGVDFGLDFLKSEEPGNYNDALGDTLFPVLDIMM 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02276 396 MobiDBLite consensus disorder prediction 1 15 - -
Vifa1g02276 396 MobiDBLite consensus disorder prediction 1 33 - -
Vifa1g02276 396 FunFam Ethylene-responsive transcription factor 2 81 140 - -
Vifa1g02276 396 CDD AP2 82 140 IPR001471 GO:0003700|GO:0006355
Vifa1g02276 396 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Vifa1g02276 396 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Vifa1g02276 396 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Vifa1g02276 396 Gene3D AP2/ERF domain 81 141 IPR036955 GO:0003700|GO:0006355
Vifa1g02276 396 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 20 360 - -
Vifa1g02276 396 SUPERFAMILY DNA-binding domain 82 140 IPR016177 GO:0003677
Vifa1g02276 396 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Vifa1g02276 396 Pfam AP2 domain 82 131 IPR001471 GO:0003700|GO:0006355
Vifa1g02276 396 MobiDBLite consensus disorder prediction 50 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02276 Vifa-Chr1 366578910 366580100 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02276 21 394 AP2-EREBP Transcription Factor Family AT2G40340 38.281 1.86e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g02276 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02276 - K09286 tpra:123924097 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02276 1 366578910 366580100 Vifa1g02276 1 366578910 366580100 ECH