Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02275 ATGGCTCTACAACAAATAGATCAAGAGGTTTCATTGCAAAATGAACAAGAAGAAACTCCATTTTCTCAACTAAGCAAACAAGACTCAATACTCTCACTCACCCTTGATGAGTTCCAATGCAAGAGTGGAAAGAGCTTTGGTTCCCTCAACATGGAAGAATTCCTAGCCAGTATTTGCAGTTCCAGTGATGAAGCTACTCAATCTCACAAGAATACTAAGAGTGTTGTACCAGAAGAAGAACAACATGGTAACTTATTCTCTATCCCTCCGCCAATTTGCAAGAAAACTGTGGATGAAGTTTGGTCCGAGATTCATAAAAACCAACCACAATTCAAAGAAGAAAATAGCCTAAAGAGAAACGAGACACTCAAGAAGCAACAAACACTTGGAGAAATGACTTTGGAGGATTTCTTTGTGAAAGCTGGTGTAGTACAACAACAATCATCATCGTTGTCATTTCAGAATCACAGTGGCAGTGTTTCAAGTAATATGAGACCATTGAGTGTTGCAAGTTATGGTTTGAGGCCTTCAATTGGAATGGGATATTCTAGAAATGGTCTTGTACCATACCAAATGTTGTCACAGAATAACAACTCAGGAGCGCAGGACCGCGCATTCGGGAAATGTCAAAACTTGCCTGAATCAAGTGGATGTAATAATAGCAAGAGGATAATTGATGGTCCTCCCGAGGTTGTAGTGGAGCGAAGGCAACGTAGAATGTTGAAAAATCGAGAGTCGGCTGCTCGTTCTCGAGCAAGAAGACAGGCATATACTGTGGAGCTAGAGGCAGAGCTGAATCACCTAAAAGAAGAGAATGAAAAGCTAAAACAAATTCTGGCTGAGGCAGAGAGCAAGAGGAAACAAGAGCTTTTACAGAGAAAGAATTCAACAAAGGGTCAAAAGGGAACAGAAAAATTGAGAGGAATAAGAAGGCCTATAAGTACAACCTGGTGA 954 0.4067 MALQQIDQEVSLQNEQEETPFSQLSKQDSILSLTLDEFQCKSGKSFGSLNMEEFLASICSSSDEATQSHKNTKSVVPEEEQHGNLFSIPPPICKKTVDEVWSEIHKNQPQFKEENSLKRNETLKKQQTLGEMTLEDFFVKAGVVQQQSSSLSFQNHSGSVSSNMRPLSVASYGLRPSIGMGYSRNGLVPYQMLSQNNNSGAQDRAFGKCQNLPESSGCNNSKRIIDGPPEVVVERRQRRMLKNRESAARSRARRQAYTVELEAELNHLKEENEKLKQILAEAESKRKQELLQRKNSTKGQKGTEKLRGIRRPISTTW 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02275 317 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 233 285 IPR004827 GO:0003700|GO:0006355
Vifa1g02275 317 FunFam protein ABSCISIC ACID-INSENSITIVE 5 isoform X1 233 289 - -
Vifa1g02275 317 MobiDBLite consensus disorder prediction 286 317 - -
Vifa1g02275 317 MobiDBLite consensus disorder prediction 66 88 - -
Vifa1g02275 317 SUPERFAMILY Leucine zipper domain 235 283 IPR046347 GO:0003700|GO:0006355
Vifa1g02275 317 Coils Coil 258 292 - -
Vifa1g02275 317 Gene3D - 233 295 - -
Vifa1g02275 317 MobiDBLite consensus disorder prediction 286 308 - -
Vifa1g02275 317 SMART brlzneu 231 297 IPR004827 GO:0003700|GO:0006355
Vifa1g02275 317 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 25 288 IPR043452 GO:0003700|GO:0045893
Vifa1g02275 317 Pfam bZIP transcription factor 235 288 IPR004827 GO:0003700|GO:0006355
Vifa1g02275 317 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 238 253 IPR004827 GO:0003700|GO:0006355
Vifa1g02275 317 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02275 Vifa-Chr1 366498874 366500238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02275 17 317 bZIP Transcription Factor Family AT3G44460 45.399 6.49e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa1g02275 bZIP_1 2.6e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02275 K14432 - gmx:100820370 317.775