Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02274 ATGGATTCAACTACTCAACATCAACATGTCCCTTATGGAATTAATCATAGGATTAACAACTCTTCATCAAGTTTAATGAATGAAGGATCTGGTTTTGATTTTGGGGAGTTAGAAGAAGCAATAGTTCTGCAAGGAGTTAAGAGTAGAAATGATGAAACAAAAGCATCTTTTTTCACGGCTAGACCTTCTGCTACACTGGAAATGTTCCCATCTTGGCCAATGAGATTCCATCAAAACTCAACAGTAGGAGGAAACAAATCAGGAGGGGAAAGCAGTGATTCAGCACTGTCAAGCAAAAATGAAAATCCTTTTGAGGAAGAATCACCATTAAGTTGTAAAAAAGGAACTTCATTTTCATCAGATAATAATAATAATCATAATCAGATTTATGATGAGCAGGATCTGCAGCTACTACAACAACAACAGAAGATGATAGCAAATGATGGTATAAGAACAGCCTCTTCATCACAGAATCAATCAGCAGAAGCAGGCAAAGAAAAGTTGCAGAAAAAGGGAGGTGGTTCTACATCAGATAAGCCACTAGATGCAAAGACATTGAGACGTTTAGCACAAAACAGGGAAGCTGCAAGGAAAAGTCGTCTAAGGAAAAAGGCTTATGTTCAGCAACTAGAGTCAAGTAGATTAAAGCTTACACAATTGGAACAAGACCTTCAAAGAGCAAGATCTCAGGGAATGTTCATGGATTGGAATGGTGGTGTTGGTGGCAATATTAGCTCTGGAGGTGCAATGTTTGACATGGAATATGGAAGATGGTTAGAAGATGACAACCGTTTATTAACGGAGTTAAGAAACGGATTACAAACGGCGGTAACAGAAAATGAAATGAGAGTAATGGTGGATGGGTATTTGTGTCATTATGATCAAATATTTAGAGTGAAAGGAATAACTGCAAAAACAGATGTGTTTCATCTTATCAATGGCATGTGGACTTCTCAAGCTGAACGTTGCTTCCTTTGGATAGGAGGCTTTAGACCCTCTGAAATTATCATGATGTTGATTCAACAATTGGAGCCACTAGCTGAGCAGCAAATAATGGGAATGTATGGACTGAGACATTCTACACAGCAAGCAGAGGAAGCTCTCTCACAAGGACTTGATCAGTTGCAACAATCTCTTGTTGACACCATTGCTGGAGGACCACTTGTTGATGGTGTTCAACAAATGGTCGTCGCCATAGGCAAGCTTTCTAATCTCGAAGGATTTCTTCGTCAGGCTGATAATTTGAGACAACAAACTCTTCATCAATTGTGTCGATTACTGACACTTCGTCAAGCTGCGCGTTCTTTTCTTGTTATTGGAGAATATTATGGACGACTTCGAGCTCTTAGTTCTCTTTGGGCATCAAGACCACGAGAGACCATGATGAGTGATGATAACTCATGCCAAACAACCACAGACATGCAAATGGTTCAACCTTCTCAGAATCATTTCTCAAGTTTCTGA 1464 0.3941 MDSTTQHQHVPYGINHRINNSSSSLMNEGSGFDFGELEEAIVLQGVKSRNDETKASFFTARPSATLEMFPSWPMRFHQNSTVGGNKSGGESSDSALSSKNENPFEEESPLSCKKGTSFSSDNNNNHNQIYDEQDLQLLQQQQKMIANDGIRTASSSQNQSAEAGKEKLQKKGGGSTSDKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDLQRARSQGMFMDWNGGVGGNISSGGAMFDMEYGRWLEDDNRLLTELRNGLQTAVTENEMRVMVDGYLCHYDQIFRVKGITAKTDVFHLINGMWTSQAERCFLWIGGFRPSEIIMMLIQQLEPLAEQQIMGMYGLRHSTQQAEEALSQGLDQLQQSLVDTIAGGPLVDGVQQMVVAIGKLSNLEGFLRQADNLRQQTLHQLCRLLTLRQAARSFLVIGEYYGRLRALSSLWASRPRETMMSDDNSCQTTTDMQMVQPSQNHFSSF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02274 487 SUPERFAMILY Leucine zipper domain 184 226 IPR046347 GO:0003700|GO:0006355
Vifa1g02274 487 ProSiteProfiles DOG1 domain profile. 248 456 IPR025422 GO:0006351|GO:0043565
Vifa1g02274 487 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g02274 487 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 182 226 IPR004827 GO:0003700|GO:0006355
Vifa1g02274 487 MobiDBLite consensus disorder prediction 112 127 - -
Vifa1g02274 487 MobiDBLite consensus disorder prediction 77 127 - -
Vifa1g02274 487 MobiDBLite consensus disorder prediction 77 105 - -
Vifa1g02274 487 MobiDBLite consensus disorder prediction 150 185 - -
Vifa1g02274 487 Pfam bZIP transcription factor 183 225 IPR004827 GO:0003700|GO:0006355
Vifa1g02274 487 Coils Coil 203 230 - -
Vifa1g02274 487 Gene3D - 183 232 - -
Vifa1g02274 487 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 187 202 IPR004827 GO:0003700|GO:0006355
Vifa1g02274 487 PANTHER TRANSCRIPTION FACTOR TGA9 114 459 - -
Vifa1g02274 487 FunFam BZIP family transcription factor 183 232 - -
Vifa1g02274 487 SMART brlzneu 180 246 IPR004827 GO:0003700|GO:0006355
Vifa1g02274 487 Pfam Seed dormancy control 266 339 IPR025422 GO:0006351|GO:0043565
Vifa1g02274 487 CDD bZIP_HBP1b-like 184 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02274 Vifa-Chr1 366269306 366273273 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02274 137 487 bZIP Transcription Factor Family AT1G08320 66.382 8.22e-176 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa1g02274 DOG1 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02274 K14431 - gmx:100775461 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02274 1 366269306 366273273 Vifa1g02274 1 366269306 366273273 ECH