Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g02274 | ATGGATTCAACTACTCAACATCAACATGTCCCTTATGGAATTAATCATAGGATTAACAACTCTTCATCAAGTTTAATGAATGAAGGATCTGGTTTTGATTTTGGGGAGTTAGAAGAAGCAATAGTTCTGCAAGGAGTTAAGAGTAGAAATGATGAAACAAAAGCATCTTTTTTCACGGCTAGACCTTCTGCTACACTGGAAATGTTCCCATCTTGGCCAATGAGATTCCATCAAAACTCAACAGTAGGAGGAAACAAATCAGGAGGGGAAAGCAGTGATTCAGCACTGTCAAGCAAAAATGAAAATCCTTTTGAGGAAGAATCACCATTAAGTTGTAAAAAAGGAACTTCATTTTCATCAGATAATAATAATAATCATAATCAGATTTATGATGAGCAGGATCTGCAGCTACTACAACAACAACAGAAGATGATAGCAAATGATGGTATAAGAACAGCCTCTTCATCACAGAATCAATCAGCAGAAGCAGGCAAAGAAAAGTTGCAGAAAAAGGGAGGTGGTTCTACATCAGATAAGCCACTAGATGCAAAGACATTGAGACGTTTAGCACAAAACAGGGAAGCTGCAAGGAAAAGTCGTCTAAGGAAAAAGGCTTATGTTCAGCAACTAGAGTCAAGTAGATTAAAGCTTACACAATTGGAACAAGACCTTCAAAGAGCAAGATCTCAGGGAATGTTCATGGATTGGAATGGTGGTGTTGGTGGCAATATTAGCTCTGGAGGTGCAATGTTTGACATGGAATATGGAAGATGGTTAGAAGATGACAACCGTTTATTAACGGAGTTAAGAAACGGATTACAAACGGCGGTAACAGAAAATGAAATGAGAGTAATGGTGGATGGGTATTTGTGTCATTATGATCAAATATTTAGAGTGAAAGGAATAACTGCAAAAACAGATGTGTTTCATCTTATCAATGGCATGTGGACTTCTCAAGCTGAACGTTGCTTCCTTTGGATAGGAGGCTTTAGACCCTCTGAAATTATCATGATGTTGATTCAACAATTGGAGCCACTAGCTGAGCAGCAAATAATGGGAATGTATGGACTGAGACATTCTACACAGCAAGCAGAGGAAGCTCTCTCACAAGGACTTGATCAGTTGCAACAATCTCTTGTTGACACCATTGCTGGAGGACCACTTGTTGATGGTGTTCAACAAATGGTCGTCGCCATAGGCAAGCTTTCTAATCTCGAAGGATTTCTTCGTCAGGCTGATAATTTGAGACAACAAACTCTTCATCAATTGTGTCGATTACTGACACTTCGTCAAGCTGCGCGTTCTTTTCTTGTTATTGGAGAATATTATGGACGACTTCGAGCTCTTAGTTCTCTTTGGGCATCAAGACCACGAGAGACCATGATGAGTGATGATAACTCATGCCAAACAACCACAGACATGCAAATGGTTCAACCTTCTCAGAATCATTTCTCAAGTTTCTGA | 1464 | 0.3941 | MDSTTQHQHVPYGINHRINNSSSSLMNEGSGFDFGELEEAIVLQGVKSRNDETKASFFTARPSATLEMFPSWPMRFHQNSTVGGNKSGGESSDSALSSKNENPFEEESPLSCKKGTSFSSDNNNNHNQIYDEQDLQLLQQQQKMIANDGIRTASSSQNQSAEAGKEKLQKKGGGSTSDKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDLQRARSQGMFMDWNGGVGGNISSGGAMFDMEYGRWLEDDNRLLTELRNGLQTAVTENEMRVMVDGYLCHYDQIFRVKGITAKTDVFHLINGMWTSQAERCFLWIGGFRPSEIIMMLIQQLEPLAEQQIMGMYGLRHSTQQAEEALSQGLDQLQQSLVDTIAGGPLVDGVQQMVVAIGKLSNLEGFLRQADNLRQQTLHQLCRLLTLRQAARSFLVIGEYYGRLRALSSLWASRPRETMMSDDNSCQTTTDMQMVQPSQNHFSSF | 487 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g02274 | 487 | SUPERFAMILY | Leucine zipper domain | 184 | 226 | IPR046347 | GO:0003700|GO:0006355 | |
Vifa1g02274 | 487 | ProSiteProfiles | DOG1 domain profile. | 248 | 456 | IPR025422 | GO:0006351|GO:0043565 | |
Vifa1g02274 | 487 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Vifa1g02274 | 487 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 182 | 226 | IPR004827 | GO:0003700|GO:0006355 | |
Vifa1g02274 | 487 | MobiDBLite | consensus disorder prediction | 112 | 127 | - | - | |
Vifa1g02274 | 487 | MobiDBLite | consensus disorder prediction | 77 | 127 | - | - | |
Vifa1g02274 | 487 | MobiDBLite | consensus disorder prediction | 77 | 105 | - | - | |
Vifa1g02274 | 487 | MobiDBLite | consensus disorder prediction | 150 | 185 | - | - | |
Vifa1g02274 | 487 | Pfam | bZIP transcription factor | 183 | 225 | IPR004827 | GO:0003700|GO:0006355 | |
Vifa1g02274 | 487 | Coils | Coil | 203 | 230 | - | - | |
Vifa1g02274 | 487 | Gene3D | - | 183 | 232 | - | - | |
Vifa1g02274 | 487 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 187 | 202 | IPR004827 | GO:0003700|GO:0006355 | |
Vifa1g02274 | 487 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 114 | 459 | - | - | |
Vifa1g02274 | 487 | FunFam | BZIP family transcription factor | 183 | 232 | - | - | |
Vifa1g02274 | 487 | SMART | brlzneu | 180 | 246 | IPR004827 | GO:0003700|GO:0006355 | |
Vifa1g02274 | 487 | Pfam | Seed dormancy control | 266 | 339 | IPR025422 | GO:0006351|GO:0043565 | |
Vifa1g02274 | 487 | CDD | bZIP_HBP1b-like | 184 | 234 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g02274 | Vifa-Chr1 | 366269306 | 366273273 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g02274 | 137 | 487 | bZIP Transcription Factor Family | AT1G08320 | 66.382 | 8.22e-176 | 496 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bZIP | Vifa1g02274 | DOG1 | 1.3e-25 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g02274 | K14431 | - | gmx:100775461 | 684.485 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa1g02274 | 1 | 366269306 | 366273273 | Vifa1g02274 | 1 | 366269306 | 366273273 | ECH |