Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02273 ATGGATTCAACTACTCAACATCAACATGTCCCTTATGGAATTAATCATAGGATTAACAACTCTTCATCAAGTTTAATGAATGAAGGATCTGGTTTTGATTTTGGGGAGTTAGAAGAAGCAATAGTTCTGCAAGGAGTTAAGAGTAGAAATGATGAAACAAAAGCATCTTTTTTCACGGCTAGACCTTCTGCTACACTGGAAATGTTCCCATCTTGGCCAATGAGATTCCATCAAAACTCAACAGGAGGAAACAAATCAGGAGGGGAAAGCAGTGATTCAGCACTGTCAAGCAAAAATGAAAATCCTTTTGAGGAAGAATCACCATTAAGTTGTAAAAAAGGAACTTCATTTTCATCAGATAATAATAATAATCATAATCAGATTTATGATGAGCAGGATCTGCAGCTACTACAACAACAACAGAAGATGATAGCAAATGATGGTATAAGAACAGCCTCTTCATCACAGAATCAATCAGCAGAAGCAGGCAAAGAAAAGTTGCAGAAAAAGGGAGGTGGTTCTACATCAGATAAGCCACTAGATGCAAAGACATTGAGACGTTTAGCACAAAACAGGGAAGCTGCAAGGAAAAGTCGTCTAAGGAAAAAGGCTTATGTTCAGCAACTAGAGTCAAGTAGATTAAAGCTTACACAATTGGAACAAGACCTTCAAAGAGCAAGATCTCAGGGAATGTTCATGGATTGGAATGGTGGTGTTGGTGGCAATATTAGCTCTGGAGGTGCAATGTTTGACATGGAATATGGAAGATGGTTAGAAGATGACAACCGTTTATTAACGGAGTTAAGAAACGGATTACAAACGGCGGTAACAGAAAATGAAATGAGAGTAATGGTGGATGGGTATTTGTGTCATTATGATCAAATATTTAGAGTGAAAGGAATAACTGCAAAAACAGATGTGTTTCATCTTATCAATGGCATGTGGACTTCTCAAGCTGAACGTTGCTTCCTTTGGATAGGAGGCTTTAGACCCTCTGAAATTATCATGATGTTGATTCAACAATTGGAGCCACTAGCTGAGCAGCAAATAATGGGAATGTATGGACTGAGACATTCTACACAGCAAGCAGAGGAAGCTCTCTCACAAGGACTTGATCAGTTGCAACAATCTCTTGTTGACACCATTGCTGGAGGACCACTTGTTGATGGTGTTCAACAAATGGTCGTCGCCATAGGCAAGCTTTCTAATCTCGAAGGATTTCTTCGTCAGGCTGATAATTTGAGACAACAAACTCTTCATCAATTGTGTCGATTACTGACACTTCGTCAAGCTGCGCGTTCTTTTCTTGTTATTGGAGAATATTATGGACGACTTCGAGCTCTTAGTTCTCTTTGGGCATCAAGACCACGAGAGACCATGATGAGTGATGATAACTCATGCCAAACAACCACAGACATGCAAATGGTTCAACCTTCTCAGAATCATTTCTCAAGTTTCTGA 1461 0.3943 MDSTTQHQHVPYGINHRINNSSSSLMNEGSGFDFGELEEAIVLQGVKSRNDETKASFFTARPSATLEMFPSWPMRFHQNSTGGNKSGGESSDSALSSKNENPFEEESPLSCKKGTSFSSDNNNNHNQIYDEQDLQLLQQQQKMIANDGIRTASSSQNQSAEAGKEKLQKKGGGSTSDKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDLQRARSQGMFMDWNGGVGGNISSGGAMFDMEYGRWLEDDNRLLTELRNGLQTAVTENEMRVMVDGYLCHYDQIFRVKGITAKTDVFHLINGMWTSQAERCFLWIGGFRPSEIIMMLIQQLEPLAEQQIMGMYGLRHSTQQAEEALSQGLDQLQQSLVDTIAGGPLVDGVQQMVVAIGKLSNLEGFLRQADNLRQQTLHQLCRLLTLRQAARSFLVIGEYYGRLRALSSLWASRPRETMMSDDNSCQTTTDMQMVQPSQNHFSSF 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02273 486 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 186 201 IPR004827 GO:0003700|GO:0006355
Vifa1g02273 486 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 181 225 IPR004827 GO:0003700|GO:0006355
Vifa1g02273 486 MobiDBLite consensus disorder prediction 111 126 - -
Vifa1g02273 486 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g02273 486 CDD bZIP_HBP1b-like 183 233 - -
Vifa1g02273 486 Coils Coil 202 229 - -
Vifa1g02273 486 Gene3D - 182 231 - -
Vifa1g02273 486 ProSiteProfiles DOG1 domain profile. 247 455 IPR025422 GO:0006351|GO:0043565
Vifa1g02273 486 PANTHER TRANSCRIPTION FACTOR TGA9 113 458 - -
Vifa1g02273 486 SMART brlzneu 179 245 IPR004827 GO:0003700|GO:0006355
Vifa1g02273 486 SUPERFAMILY Leucine zipper domain 183 225 IPR046347 GO:0003700|GO:0006355
Vifa1g02273 486 Pfam bZIP transcription factor 182 224 IPR004827 GO:0003700|GO:0006355
Vifa1g02273 486 MobiDBLite consensus disorder prediction 69 126 - -
Vifa1g02273 486 MobiDBLite consensus disorder prediction 149 184 - -
Vifa1g02273 486 Pfam Seed dormancy control 265 338 IPR025422 GO:0006351|GO:0043565
Vifa1g02273 486 FunFam BZIP family transcription factor 182 231 - -
Vifa1g02273 486 MobiDBLite consensus disorder prediction 74 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02273 Vifa-Chr1 366269306 366273273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02273 136 486 bZIP Transcription Factor Family AT1G08320 66.382 7.67e-176 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa1g02273 DOG1 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02273 K14431 - gmx:100775461 686.411