Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02272 ATGAACCACATTGAGACACTTCTCAGTGCACCTAACACCAATACCAAACACAACAAAAGATGGCACAATGCTTTCATCACAATCTACTGTTCTAGAGCTTTCAACTCACATTTTACCAACAAACCTAAAATCACATCCACCCCATCTTTCACTCTCCTTGATATCAATTCACCTCACTCTTTTACCATTGATCAACTAACTCTCATTCATCTTCTCAAACACAAAAACATTGAAACCCTTCAAAAATATGATGGAGGAGTTCAAGGTATTGCTGCATCTCTTCAAACCAACACTGAGTTTGGTATCCATCATGACTCTGAAGACATTGCAATCAGAAAACAAGTGTTTGGTTCCAACACATACAATAAACCACCTTCTAAAAGTTTCATTCACTTTGTTCTTGAAGCATTTAAGGATGTGACGATTCTAATCCTTTTGGTTTGTGCTTCTCTTTCACTTGGCTTTGGTATCAAAGAACATGGAATCAAACAAGGTTGGTATGACGGTGGTAGCATTTTTCTTGCTGTTTTCATTGTTATTTCAATGTCATCCATAAGTAACTTCAAACAAAACAAACAATTTGATAAATTGTCTCAAGTTAGCAATGATATTCAAATTGATTTGGTTCGAAGTGGTCGCAGACAAAAGGTATCAATCTTTGAGATTGTTGTTGGTGATATTGTTTGTTTGAAAATTGGTGATCAAGTACCGGCCGATGGATTGTTCGTAGATGGACATTCACTCAGAGTTGATGAATCCAGCATGACCGGTGAGAGCGATCATGTAGAGATTAGTAAACTCCATCATCCTTTTTTGTTTTCCGGTACAAAAGTTGCTGACGGATATGCCAAAATGCTAGTTACATCGGTCGGTATGAACACAACATGGGGACAGATGATGAGCTCTATAAGCAATGACAATGATGAAGAAACACCTTTGCAGACAAGGTTGAATAAGCTAACATCGTCTATCGGAAAGGGTGGTTTGGCTGTGGCGTTTTTAGTTCTTGTTGTGTTGCTGATTCGATACTTCACCGGGAACACAAAGACGGATAATGGAGTTCGAGAATTTAATGGAAGAAAGACTAGTTTTGATGAAGTGATGAATGCAGTAATTGGAATTATTTCTGATGCTGTTACTATTGTTGTTGTTGCTATCCCTGAGGGTTTGCCATTAGCAGTGACTTTGACTCTTGCTTATTCAATGAAGAAAATGATGGCTGATCAAGCTATGGTCAGAAAACTTTCTGCATGTGAGACTATGGGATCTGCTACTACTATTTGCACTGATAAAACAGGTACACTCACTTTGAATCAGATGAAGGTGACAAAATTTTGGCTTGGTTTAGAACCACTGGAAGATGGTGCATATTTAAATGTTGATCCATTTGTTCTTCAATTGATCAAAGAAGGAGTTGCTCATAATACAACCGGTGGAGTTCATGAATCTAAATCAGTTTCTGATTCAAAATTTGAATTTTCTGGTAGTCCAACAGAAAAGGCAATATTATCTTGGGCTGTTTTGGAATTGAATATGGAGATGGAAACTTTGACAAAAAGTTGCTCTATTCTTCAAGTTGAAACTTTCAACTCAAAGAAGAAAAGGAGTGGAGTTTTGTTGAAAAGAAATGTTGACAACAAAATTAATGCACACTGGAAAGGAGCAGCAGAGATGGTACTGAGAATGTGCTCAAAATACTATGATGCTTATGGCATTGTGAAATATCTTGACAATGAAACCATGTCGAAATTCGAAAGCATTATTCAAGGTATGGCAGCTAGTAGTCTTCGTTGCATCGCTTTCGCATATGCTGAAGTTGATGTTCAAGAGCTAGGAGATGAACGAGAAAACAGCGGGATAGTGGTAAAAGACAATGGTTTAACATTGTTAGGACTTGTTGGTATTAAGGATCCGTGTCGTCCTGGGGTGAAGACTGCGGTGGAAGCTTGCCAACATGCTGGTGTGAATGTCAAAATGATTACAGGTGACAATATTTTCACTGCAAAAGCTATAGCATTTGAATGCGGGATTCTTCAAGCTAATCAAGACACCGATGAAACCGTGGTTGAAGGCGAACAATTTCGCAACTTCACGCACGAAGAAAGGTTGGAGAAAGTTGAAAAAATCTCAGTGATGGCAAGATCATCTCCATTTGACAAACTTCTGATGGTTGAATGCTTAAAAGAAAAAAGGCATGTAGTTGCTGTAACAGGAGACGGTACAAATGATGCACCAGCATTGAAAGAAGCTGATATTGGACTTTCAATGGGAATTCAAGGTACAGAAGTTGCAAAAGAGAGTTCAGATATTGTTATATTAGATGACAATTTTGCATCTATAGTAACAGTTTTAAATTGGGGAAGATGTGTTTACAACAACATCCAAAAATTCATTCAATTTCAACTAACAGTGAATGTAGCTGCACTTGTTATCAATTTTGTAGCAGCAGTTTCAGCAGGTGAAGTTCCATTAACAGCAGTTCAATTATTATGGGTCAATTTGATTATGGATACATTAGGTGCTTTGGCTCTTGCAACTGAAAAACCTACTAAGGAATTGATGGATCAAAAACCTGTGGGTAGAACAAAACCTCTTATCACTAACATTATGTGGAGGAATCTTCTGTCACAAGCTATCTACCAAATAGTAATTTTGTTGACTCTACAATTTAAAGGGGAAAATATTTTTGGTGTGACATCAAAGGTAAATGACACATTGATTTTTAATACATTTGTTCTTTGTCAAGTGTTTAATGAGTTCAATGCAAGGAAGTTGGAGAAGAAGAATGTTTTTGAAGGGATATTTAAAAGCAAATTGTTTATGGGAATAGTTGGTGTGACATTGGTGCTTCAAGTAGTGATGGTTGAGTTTTTGAAGAAATTTGCTGATACAGAGAGATTGAATTGGAGAGAATGGATTATTTGTATTGGTCTTGCTTCTGCTTCTTGGCCAATTGGTTTTGTTGTGAAGTTGATACCTGTTTCAGATAAACCATTACTTGATTTTCTGAGTGTGAAGAAGAAATTATGA 3030 0.3703 MNHIETLLSAPNTNTKHNKRWHNAFITIYCSRAFNSHFTNKPKITSTPSFTLLDINSPHSFTIDQLTLIHLLKHKNIETLQKYDGGVQGIAASLQTNTEFGIHHDSEDIAIRKQVFGSNTYNKPPSKSFIHFVLEAFKDVTILILLVCASLSLGFGIKEHGIKQGWYDGGSIFLAVFIVISMSSISNFKQNKQFDKLSQVSNDIQIDLVRSGRRQKVSIFEIVVGDIVCLKIGDQVPADGLFVDGHSLRVDESSMTGESDHVEISKLHHPFLFSGTKVADGYAKMLVTSVGMNTTWGQMMSSISNDNDEETPLQTRLNKLTSSIGKGGLAVAFLVLVVLLIRYFTGNTKTDNGVREFNGRKTSFDEVMNAVIGIISDAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTKFWLGLEPLEDGAYLNVDPFVLQLIKEGVAHNTTGGVHESKSVSDSKFEFSGSPTEKAILSWAVLELNMEMETLTKSCSILQVETFNSKKKRSGVLLKRNVDNKINAHWKGAAEMVLRMCSKYYDAYGIVKYLDNETMSKFESIIQGMAASSLRCIAFAYAEVDVQELGDERENSGIVVKDNGLTLLGLVGIKDPCRPGVKTAVEACQHAGVNVKMITGDNIFTAKAIAFECGILQANQDTDETVVEGEQFRNFTHEERLEKVEKISVMARSSPFDKLLMVECLKEKRHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASIVTVLNWGRCVYNNIQKFIQFQLTVNVAALVINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTKELMDQKPVGRTKPLITNIMWRNLLSQAIYQIVILLTLQFKGENIFGVTSKVNDTLIFNTFVLCQVFNEFNARKLEKKNVFEGIFKSKLFMGIVGVTLVLQVVMVEFLKKFADTERLNWREWIICIGLASASWPIGFVVKLIPVSDKPLLDFLSVKKKL 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02272 1009 PRINTS H+-transporting ATPase (proton pump) signature 737 753 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g02272 1009 PRINTS H+-transporting ATPase (proton pump) signature 584 602 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g02272 1009 PRINTS H+-transporting ATPase (proton pump) signature 769 794 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g02272 1009 PRINTS P-type cation-transporting ATPase superfamily signature 251 265 - -
Vifa1g02272 1009 PRINTS P-type cation-transporting ATPase superfamily signature 653 663 - -
Vifa1g02272 1009 PRINTS P-type cation-transporting ATPase superfamily signature 428 442 - -
Vifa1g02272 1009 PRINTS P-type cation-transporting ATPase superfamily signature 737 756 - -
Vifa1g02272 1009 PRINTS P-type cation-transporting ATPase superfamily signature 761 773 - -
Vifa1g02272 1009 PRINTS P-type cation-transporting ATPase superfamily signature 631 642 - -
Vifa1g02272 1009 FunFam Calcium-transporting ATPase 176 304 - -
Vifa1g02272 1009 NCBIfam HAD-IC family P-type ATPase 371 448 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g02272 1009 NCBIfam HAD-IC family P-type ATPase 708 818 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g02272 1009 SUPERFAMILY Calcium ATPase, transduction domain A 206 302 IPR008250 -
Vifa1g02272 1009 SFLD p-type atpase 410 790 IPR044492 -
Vifa1g02272 1009 Gene3D - 106 304 - -
Vifa1g02272 1009 Gene3D - 425 782 IPR023214 -
Vifa1g02272 1009 PANTHER CATION TRANSPORTING ATPASE 45 995 - -
Vifa1g02272 1009 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 435 635 IPR023299 GO:0000166
Vifa1g02272 1009 Pfam Cation transporter/ATPase, N-terminus 84 152 IPR004014 -
Vifa1g02272 1009 NCBIfam calcium-translocating P-type ATPase, PMCA-type 62 994 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vifa1g02272 1009 Gene3D - 135 985 - -
Vifa1g02272 1009 Pfam Cation transporting ATPase, C-terminus 822 992 IPR006068 -
Vifa1g02272 1009 SUPERFAMILY HAD-like 426 842 IPR036412 -
Vifa1g02272 1009 Pfam haloacid dehalogenase-like hydrolase 425 751 - -
Vifa1g02272 1009 SFLD C1.7: P-type atpase like 410 790 - -
Vifa1g02272 1009 ProSitePatterns E1-E2 ATPases phosphorylation site. 430 436 IPR018303 -
Vifa1g02272 1009 FunFam Calcium-transporting ATPase 632 782 - -
Vifa1g02272 1009 Pfam E1-E2 ATPase 205 406 - -
Vifa1g02272 1009 CDD P-type_ATPase_Ca_PMCA-like 112 870 - -
Vifa1g02272 1009 Gene3D - 438 638 IPR023299 GO:0000166
Vifa1g02272 1009 FunFam Calcium-transporting ATPase 754 996 - -
Vifa1g02272 1009 SUPERFAMILY Calcium ATPase, transmembrane domain M 84 994 IPR023298 -
Vifa1g02272 1009 FunFam Calcium-transporting ATPase 438 638 - -
Vifa1g02272 1009 SMART Cation_ATPase_N_a_2 81 157 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02272 Vifa-Chr1 365736634 365739941 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02272 4 1008 Primary Pumps ATPases AT3G22910 66.929 0.0 1291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02272 K01537 - gmx:100793918 1590.47