Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02271 ATGAACAGAAAAAGACATCTAAATCAGTTGAAGAATCCATTCAGTTCTCACCCTTTTGAAGCCATTTCCTTGGGCTCATGGCATCCGGTGGAGTCGATAAAAGTTAAGTCGGGAGCTATAACCATACATTTTGCAGATAATCACCGTATCACTATGGATAAAGGTACTTTATCAGCTGTGGATAAAGGTACTTTATCAGACATTCGAATAAGCTCAAGGAAAGCTATTGTGTCCGATTGCTCCCGTTTTTTACGTCCTGGAATTGACATATGCGTGCTAACACCCCGTAAACAAGCCAATGATTCAGCTGGTTTAAATCCGGAGCCTGTTTGGATGGATGCTAGAATAAGTTCTATACAAAGAAAGCGGCATGATTCCGAGTGCTCGTGTCAGTTTTTTGTCAACTTCTATGTCGATCAAGGTTCACTTGGTTTAGAGATGAGAACTCTTTGTAAGGATATCAAAGTATTCAGACTCAATCAGATCTCCATCCTCCAAAAAGTCGACCATAATCCTTGTGAAAATCAACCCTACCGGTGGTCTTCATCCGAGGATTGCTCTTCATTACCACACAGTAAATTGCTATTGGGAAAGTTTTTATCCGATCTTTCATGGTTAGTTGTTACGTCGGTTGTCAAGAAGGTTTCTTTCAGTGCAAGATCGGTTGAAAACAAGATGGTGTATCAAATTTTGATAGGCGATAGTAGTACTAGCTTGTTGTCGAACAGCGAGTCTCATATTGATGTTGTCAGTTTCAAAAATGACAATGGCATGTTGGTACCGATTGTTTCTCAAGTTGCTATAGCTAACACCAAGAGAGTTTGTCATGCGTATGAATCCCATGCGGATGAAGCTTCGTCATCTCTTAATGCAGATGGCTTACGACGCTCCAAACGCAGGCATGTCCAGCCCGAGCGTTACCTTGGTTGCGAAGTTAAAGAGTTGGATGTTGGTTCCTTTAGAAACGCTCCGCCGGTTAGGATAAATACGTCCATCAAAGAAGACGAAATGTCGTTGTCTTTAGCGTGCTTTTTGCGTTTGCATCAAAACCGTCACGAAAAGAATGGCGAGAAATCTCAGAAGTCCGACAGACCGAATACCAGCCAAAAGCTTCTAGTGTACAATCGGAGGCCTAAAAACCGAGAATTGAAGAAGTCTTGTGAAGTTGATCAAAATGAACATAATAATCAACTTGCTATTATCCCTCTCCCTGATCAAGATGCTGATCCAATAACCGTGGAGCATTGCGATCTAAACAGAAACGTTATTAGAAGTAACGAGCCTGTATCATCTGATATTTCTTTGAAGTATCGTCATTTGGTTAATACTCCTAAACCAAGGAAAAACATTAACTTGTTAGATACTTCTGGAAAGTCGGGAGACGCTGAAAGTAGCGATAATGCTTTTCTGAGAAGTAAATTTTTCGGCTCCTCTAAGTTACAAAAGAAGAGTTTGGGTGGTTTGGATGATATGGAACTTGGAAATAAATGGGAAAGGATAAAAAGAAAATCCAAAAAAGGTTTTCGTGAGGGAAAATACCGTTCGACGTATTTAAGAAATAACGACGAAGGAAGAACTCATAATTATAAAGACAGATCATTGAATGCCACTGCATACAAGGATTTGATAAATTCATATTTATTGAATATTAATGAAATACCTGTGAAAGAAGAGCCACCTATTACGGCTCAATGGAAGAAGCGAGACACAACAAACGGAGTTGGACAAAAGGAGGAGGCCGAGATTTCTCATGGAGAGGACGAAGAAGAAAAAGCTGAACTCGATAAACTGTGGAAAGAACTTGAAGTGTCGCTGGCATCAAGTTATTTTGAAGAATCAGAGGTTTCAAATGCGATTGTTCCTTACGAGCCTGAGAAAAATTCGAAAAAAGATTGTGAACATGATAATAGATTGGATGAAGAAATCGGAATATACTGCATTAGATGTGGATTTGTGACCACCGATATCAGAGATGTTAATCCAATCTTCGTCGAAAAATCAGTGTGGTGTCAAGAGGAGAAGCAGCGTGATGGAGTAGAAGACAAAGAGTCTACGAAGGCTGATGAAGATGATGATTTCCGTTTCTTTCCGACCGATGTCTCTCCCGACGAACCAATATCTGAAGAAAGCGAAAGCGTTTGGTCATTAATTCCCGAACTCAAAGATAAGTTGCACGTTCATCAAAAGAAAGCTTTCGAGTTTCTTTGGCAAAATATTGCAGGCTCTACAGATCCAAGACTAATTGAAGCAGAATACAGAAAAAGAGGTGGATGTGTGATATCTCATACTCCTGGAGCCGGAAAAACTTTTCTCATCATTGCTTTTCTCGTAAGCTACTTGAAGTTATTCCCGGGGAAGCGACCTCTAGTTCTTGCACCGAAAACAACTCTCTATACTTGGTATAAAGAGTTTATCAAGTGGGAGATTCCTATACCGGTGTATCTGATTCACGGTCGCAGAACCTATAGAGTATTCAAGCAGAATAATTATGCTTCTCTTCCCGGTGTTCCCAAGCCTACCGATGATGTCAAGCATGTTTTGGATTGCCTTGAGAAGATACAAAAATGGCATTCGCGTCCGAGTGTTCTTATCATGGGCTACACTTCATTTTTAACATTGATGCGAGAGGATTCAAAGTTTGCTCACAGAAAGTTTATGGCTAAAGTGTTGAGGGAAAGTCCGGGACTATTGGTACTTGATGAAGGCCACAATCCTAGAAGCACTAAGTCGAGGTTGAGAAAAGTTTTGATGAAAGTACAAACCGAATTGAGAATTTTACTGTCTGGTACTTTGTTTCAAAATAACTTCTGTGAATACTTCAACACTCTTTGTTTGGCAAGACCAAAGTTCGCTCACGAAGTACTGAAAGCGTTAGACCCTAAATACAGGAAGAAGAAGAAAGGAGCGGAACGGAAAGGAGCCGAGAAAGCACAGTATTTAATCGAGTCACGGGCTAGAAAATTCTTCTTAGATAACATTGCTAAGAAAATCGACTCGAATGTTGGTGAGGAAAGATTGCAAGGCTTGAACATGTTGAGAAATGCGACGAACAGTTTTATCGATGTTTATGAAGGTGGAAGTTCTGACGATTTACCCGGTATACAAATATACACACTGCTAATGAACACAACTGATATACAGCATGAGATTCTGCGGAAACTGCATATTGACATGGCTAAGTGCAGTGGATACCCTCTCGAGTTAGAGCTTTTGATAACACTTGGATCGATTCATCCTTGGTTGGTCAAAACAGCGGTATGTTCTCAGAAGTTTTTAACAAAGGAGCAATTGTCTGATCTTGATAAGTACAAGTTTGATTTGAAAATAGGTTCGAAAGTACGATTTGTTTTGAGCCTTATCTATCGTGTTGTCAAGAACGAAAAGGTTCTCATCTTTTGCCACAACATTGCACCTGTGAGACTATTTCAAGAGTATTTCGAAAAGTACTTTGGATGGCAAAAGGGCCGAGAAGTTTTAGTACTAACTGGTGAACTCGAGCTCTTCGAACGTGGCAAAATAATGGATAAGTTCGAGGAGCCTGGTGGAGCATCAAAGATACTACTTGCTTCAATCACAGCTTGCGCTGAAGGCATTAGTTTGACCGCAGCTTCGCGTGTGATCATGTTGGATTCAGAATGGAATCCTTCGAAAACAAAGCAAGCTATTGCACGCGCGTTTCGTCCGGGTCAGCAGAAAATGGTTTATGTTTATCAGCTCTTGGTGACAGGTTCGTTGGAGGAAGATAAGTACCGAAGAACCACGTGGAAAGAATGGGTGTCAAACATGATTTTCAGCGAGGCGTTTGTCGAGGATCCTTCGCGTTGGCAAGCTGAGAAGATTGAAGATGATATTCTGCGCGAAATGGTCGAGGAAGATAAGTCTAAATCATTTCATATGATCATGAAGAATGAAAAAGCTTCAACAAACAAATAA 3933 0.4053 MNRKRHLNQLKNPFSSHPFEAISLGSWHPVESIKVKSGAITIHFADNHRITMDKGTLSAVDKGTLSDIRISSRKAIVSDCSRFLRPGIDICVLTPRKQANDSAGLNPEPVWMDARISSIQRKRHDSECSCQFFVNFYVDQGSLGLEMRTLCKDIKVFRLNQISILQKVDHNPCENQPYRWSSSEDCSSLPHSKLLLGKFLSDLSWLVVTSVVKKVSFSARSVENKMVYQILIGDSSTSLLSNSESHIDVVSFKNDNGMLVPIVSQVAIANTKRVCHAYESHADEASSSLNADGLRRSKRRHVQPERYLGCEVKELDVGSFRNAPPVRINTSIKEDEMSLSLACFLRLHQNRHEKNGEKSQKSDRPNTSQKLLVYNRRPKNRELKKSCEVDQNEHNNQLAIIPLPDQDADPITVEHCDLNRNVIRSNEPVSSDISLKYRHLVNTPKPRKNINLLDTSGKSGDAESSDNAFLRSKFFGSSKLQKKSLGGLDDMELGNKWERIKRKSKKGFREGKYRSTYLRNNDEGRTHNYKDRSLNATAYKDLINSYLLNINEIPVKEEPPITAQWKKRDTTNGVGQKEEAEISHGEDEEEKAELDKLWKELEVSLASSYFEESEVSNAIVPYEPEKNSKKDCEHDNRLDEEIGIYCIRCGFVTTDIRDVNPIFVEKSVWCQEEKQRDGVEDKESTKADEDDDFRFFPTDVSPDEPISEESESVWSLIPELKDKLHVHQKKAFEFLWQNIAGSTDPRLIEAEYRKRGGCVISHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVYLIHGRRTYRVFKQNNYASLPGVPKPTDDVKHVLDCLEKIQKWHSRPSVLIMGYTSFLTLMREDSKFAHRKFMAKVLRESPGLLVLDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFAHEVLKALDPKYRKKKKGAERKGAEKAQYLIESRARKFFLDNIAKKIDSNVGEERLQGLNMLRNATNSFIDVYEGGSSDDLPGIQIYTLLMNTTDIQHEILRKLHIDMAKCSGYPLELELLITLGSIHPWLVKTAVCSQKFLTKEQLSDLDKYKFDLKIGSKVRFVLSLIYRVVKNEKVLIFCHNIAPVRLFQEYFEKYFGWQKGREVLVLTGELELFERGKIMDKFEEPGGASKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLVTGSLEEDKYRRTTWKEWVSNMIFSEAFVEDPSRWQAEKIEDDILREMVEEDKSKSFHMIMKNEKASTNK 1310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02271 1310 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 749 949 IPR014001 -
Vifa1g02271 1310 Pfam SNF2-related domain 727 963 IPR000330 GO:0005524|GO:0140658
Vifa1g02271 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1029 1292 IPR027417 -
Vifa1g02271 1310 CDD SF2_C_SNF 1104 1240 - -
Vifa1g02271 1310 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 62 1308 IPR044567 GO:0080188
Vifa1g02271 1310 Pfam Helicase conserved C-terminal domain 1112 1228 IPR001650 -
Vifa1g02271 1310 CDD DEXHc_ATRX-like 724 950 - -
Vifa1g02271 1310 MobiDBLite consensus disorder prediction 571 589 - -
Vifa1g02271 1310 SMART ultradead3 720 964 IPR014001 -
Vifa1g02271 1310 Gene3D - 1040 1310 IPR027417 -
Vifa1g02271 1310 MobiDBLite consensus disorder prediction 567 589 - -
Vifa1g02271 1310 Gene3D - 700 993 IPR038718 -
Vifa1g02271 1310 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1115 1276 IPR001650 -
Vifa1g02271 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 708 952 IPR027417 -
Vifa1g02271 1310 Gene3D - 105 155 - -
Vifa1g02271 1310 MobiDBLite consensus disorder prediction 352 372 - -
Vifa1g02271 1310 SMART helicmild6 1140 1229 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02271 Vifa-Chr1 365671917 365676444 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02271 1108 1247 RAD5 or RAD16-like Gene Family AT5G43530 32.867 2.67e-11 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa1g02271 SNF2_N 3.1e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02271 K10875 - gmx:100811703 1751.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02271 1 365671917 365676444 Vifa1g02271 1 365671917 365676444 ECH