Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02262 ATGTATCATCATCATCACCAAGCAAAAAATATTCTCTCTTCTTCAAGAATGTCAATACCATCTGAGAGACACATGTTTCTTCAAACAGGAAATGGATCTAGTGATTCTGGACTTGTTCTCTCAACTGATGCTAAGCCTAGATTAAAATGGACACCTGATCTTCATGCAAGGTTTATAGAAGCTGTCAATCAGTTAGGTGGAGCTGACAAAGCTACTCCAAAAACAGTGATGAAACTCATGGGAATTCCGGGACTTACCTTATATCATCTAAAGAGCCATCTTCAGAAGTATAGATTGAGCAAGAATCTGCATGGACAAAGCAACAATAATAACGTGACACACAGAATAAACACACATTCGGCTTCCGGAACTGATGAGAGGCTTTCTGATCAAACCAATGGAACTCACATCAATAAATTAACCCTTGGACCGCAACCTAATAACAACAACAAAGATTTACACATAAGCGAGGCGCTACAAATGCAGATTGAGGTTCAGAGAAGACTCAATGAACAACTTGAGGTACAAAGACACTTGCAGCTTAGGATAGAGGCACAAGGAAAATACCTTCAATCAGTGCTTGAGAAAGCTCAAGAAACACTTGAAATGAAAGAGTTACAAGGTTTTTGTCCTCAACAAATACAAATCACAAACCAACCAAACGACGGCTCGATGGACAGTAGCTGCTTAACATCGAGCGAACGATCACAAAAGGAACACGAGATCATTCAAAATGGAGGGTTTGGTTTAAGACACTTCAACAACAATAACAACAACAATAATCATGCGTTCATGGAAAGAAAAGAACAACAATTATCAGAAGCAGCTGCTTCTATGCAAAACCTTAGAAACACTGAAGTACTAAAATGGTGTGTTGATGAAGTGAAAAAGAACAGCAATTTTCTCACCCCTTTAGAAAGAAATCATGGAAACTTGTCTATGAACATTGGAGTTGAACAAAATCACTTAGATGTTGGTGAGTTTCAACACAGAAGTACTGCAAGAACAGAATCAATGAAACCAATGGATGATAATAACAAGATTCAACAACCTTCTAATTACTTTTCAGCTTCAAGATTGGATCTAAACAGTCGTGGAGATAATAATGAAGGTGCTACAAGTTGTAAACAACTTGATTTGAATAGGTTCAGTTGGAACTGA 1161 0.3773 MYHHHHQAKNILSSSRMSIPSERHMFLQTGNGSSDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNNNVTHRINTHSASGTDERLSDQTNGTHINKLTLGPQPNNNNKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLEMKELQGFCPQQIQITNQPNDGSMDSSCLTSSERSQKEHEIIQNGGFGLRHFNNNNNNNNHAFMERKEQQLSEAAASMQNLRNTEVLKWCVDEVKKNSNFLTPLERNHGNLSMNIGVEQNHLDVGEFQHRSTARTESMKPMDDNNKIQQPSNYFSASRLDLNSRGDNNEGATSCKQLDLNRFSWN 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02262 386 MobiDBLite consensus disorder prediction 331 351 - -
Vifa1g02262 386 FunFam Myb family transcription factor 44 102 - -
Vifa1g02262 386 NCBIfam myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677
Vifa1g02262 386 SUPERFAMILY Homeodomain-like 44 100 IPR009057 -
Vifa1g02262 386 Coils Coil 265 285 - -
Vifa1g02262 386 Gene3D - 44 102 - -
Vifa1g02262 386 Pfam MYB-CC type transfactor, LHEQLE motif 154 200 IPR025756 -
Vifa1g02262 386 Coils Coil 156 176 - -
Vifa1g02262 386 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 10 328 IPR044848 GO:0003700
Vifa1g02262 386 Pfam Myb-like DNA-binding domain 47 98 IPR001005 -
Vifa1g02262 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02262 Vifa-Chr1 364167503 364169519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02262 77 386 G2-like Transcription Factor Family AT3G04030 43.228 1.13e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa1g02262 Myb_DNA-binding 3.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02262 - - gmx:100810396 463.381