Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02261 ATGGGTGGAAATTCACCATGTGCTTCATGCAAGCTTTTGAGACGCAGATGCGCAAAAGATTGCACCTTTGCTCCTTATTTCCCCTCTCATGAACCCCAAAAGTTTGCCATAGTTCATAAGGTTTTTGGAGCTAGCAACGTTAGCAAAATGTTACAGGAGCTTCCGGTTCATAAAAGAGCAGATGCAGTCAGCAGTTTAGTCTATGAAGCAAATGCAAGAGTGAGAGATCCAGTTTACGGCTGTGTTGGAGCAATATCCTATTTACAAAACCAAGTGTCTGAACTTCAAATGCAGCTTGCAGTAGCTCAAGCAGAGATACTATGCATCCAGATGCAAAATGAACAAGTGATTATTCCAAATCCAGAAATTAATCAAGACCAGAAAACTTACTTTACTCAAGATGAACTCACTCAGTTTCTTAATTACGGTTCTTCTTCTAGTAATAATAATGTTTATGATTCTCTTAAAAGAGATAACATTTATGGACATGATATGGTTTCTTGA 504 0.381 MGGNSPCASCKLLRRRCAKDCTFAPYFPSHEPQKFAIVHKVFGASNVSKMLQELPVHKRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQNEQVIIPNPEINQDQKTYFTQDELTQFLNYGSSSSNNNVYDSLKRDNIYGHDMVS 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02261 167 Coils Coil 85 105 - -
Vifa1g02261 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 127 - -
Vifa1g02261 167 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Vifa1g02261 167 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02261 Vifa-Chr1 363459342 363460224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02261 3 131 AS2 family AT2G30130 80.303 6.45e-74 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa1g02261 LOB 3.5e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02261 - - lang:109360574 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02261 1 363459342 363460224 Vifa1g02261 1 363459342 363460224 ECH