Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02246 ATGGCACCGAAGAAGGAGAAGGCACCACCGCCGTCGTCAAAGCCGGCGAAGTCCGGCGGAGGAAAACAGAAGAAGAAGAAATGGAGCAAGGGTAAGCAAAAGGAAAAGGTCAACAATATGGTCTTGTTTGACCAAGGTACCTACGATAAGCTTCTCACTGAAGCTCCCAAGTACAAACTCATCACTCCGTCGGTTCTTTCCGATCGTCTCAGGGTTAACGGATCTTTGGCACGTCGTGCAATCAAAGATTTGATGGCGAGGGGTTTGATTAGGTTGGTTTCTGCTCATGCTAGCCAACAGATTTACACCAGAGCCACTAATACATAA 327 0.4801 MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKYKLITPSVLSDRLRVNGSLARRAIKDLMARGLIRLVSAHASQQIYTRATNT 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02246 108 PANTHER 40S RIBOSOMAL PROTEIN S25 1 108 IPR004977 -
Vifa1g02246 108 MobiDBLite consensus disorder prediction 1 36 - -
Vifa1g02246 108 Pfam S25 ribosomal protein 7 105 IPR004977 -
Vifa1g02246 108 Gene3D - 21 108 - -
Vifa1g02246 108 FunFam 40S ribosomal protein S25 21 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02246 Vifa-Chr1 361215034 361215559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02246 1 108 Cytoplasmic Ribosomal Protein Gene Family AT2G21580 86.111 2.50e-54 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02246 K02975 - mof:131149219 157.918