Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02241 ATGATCAAGAACATGAATCTTTCTGCGCCTTTTTGGCATGTAGTTGTGTGGTTCTTGTTTTTTAACTTGAGTTTGTGCTGCTATTCTTTGAATGAAGAAGGTATTACTCTTTTGAAGCTGAAGAAGAGAATAACTAGCGACCCTTTTGATGCTTTGTCAAATTGGGTTGATGATGAAGCTTCTCTTGATCCCTGTCATTGGTTTGGAGTTGAATGCTCAGATAGAGAAGTTGTTGTCTTGAATTTGAAAGACCTTTGCCTTGAAGGAAGTTTGGCACCAGAGCTTATGAACCTTGTTCACATAAAATCTATTATTTTAAGGAACAACTCTTTCCATGGAACCATACCTGAAGAAATTGTAGGCTTAAAAGAATTGGAGATTTTGGATTTGGGATATAACAACTTCAGTGGACATCTTGATGCTAATTTTGGTCATAATATCTTATCACTTGCAATTCTTTTGCTAGACAACAATGAGCACCTTGCTGGTTTCTCTCCTAAAATCAATGAACTGAAAATGCTTTCTGAGTTTCAAGTAGATGAAAATCAGTTAATCAATGCAGCTAACAAGCCATCTTGTTCAGAAAGATCCATCAAATGGCGTGCTCGCGAAAATGAAGGTCCTAGGAGAATGCTGGAATACCGCGAACTACATCGTCGTCCTTTTCATTACCATCGTAATCATACTTCACCTCTCTATAGGCCTTCTTCTTCGCTTCCCCCATCGGTCACTGAAGTACCACTGGTCCCGAGTCCAGATTCTCCAAATCAAAATGCTTCTGATTCTCCAAATCAAAATGCTTCTGATTCTCCGGATCAAAACGCTTCAGATTCGCCTCCTCAAAGTGTACTATCAAAGAAGAATCAAGTGCCTATTTTTGCCGGAGTTATTATCGGCAGTGCTGTGTTTCTTGTTATTTCAACCATTGGTATATATCTTTGTAAAACCAACAAGGTATCTATTGTTAAACCTTGGACTACTGGAATAAGTGGACAGCTTCAAAAAGCACTTGTGACAGGTGTGCCAAAGCTAAAGAGAATAGATCTTGAAGTAGCATGTGAAGATTTTAGTAATGTAATCGGTAAATCACCGATTGGTACATTGTACAAAGGAACTTTATCTAGTGGAGTTGAAATTGCTGTAGCTTCTGTTTCTCTGACATTATCCAAGACTTGGACAAAGAATTTAGAAGCTCAGTTTAAGAACAAGATAGACACACTATCAAAAGTGAACCATAGGAATTTTGTCAATCTTATTGGATATTGTGAAGAAGAAGAACCTTTTACCAGAATGTTGGTTTTTGAATATGCGCCAAATGGAACACTATTCGAGCATTTACACGTGAAAGAAGCTGAGCACTTGAACTGGGGACTGAGACTTAGAATTGTGACAGGAATGGCTTACTGCCTACAATACATGCATGGATTAGACCCTCCTGTGGCCCTTACCAATCTGAGTTCTTCAACTGTCCATCTAACAGATGATCATGCAGCAAAAATCTCGGATTTGAGTTTCTCCCGCGAAACAGATTCATCTGAAAAGAAACCTGATGGTAGAAAAGACATTGATATTGATATGATGCAATCAACAAGTCCAGCGAGTAATGTTTATAGCTTTGGTGTTTTGTTATTCGAGATAGTAACCGGTCGGATTCCTTATTCGCTGGATAATAGCTCAGCTGAAAACTGGGCAGCACATTATCTAAAATGGGACAAACCTATGAAGGAAATGGTGGATGCAACTCTAGCATCTTACCAAGAGAATCAGGTGGAACAAGTTGCGGAGTTGATAAAAGATTGTGTGGATCCTGATTCGGAGAAGAGACCGAGAATGAATGAAGTGAGTGAGAGATTGAGAGAAATAACGAAAATGTCGTCTGAGTTTGTAGTTCCTAAACTTTCTCCACTTTGGTGGGCTGAGCTTGAGATTTCTTCTGCATAA 1941 0.3895 MIKNMNLSAPFWHVVVWFLFFNLSLCCYSLNEEGITLLKLKKRITSDPFDALSNWVDDEASLDPCHWFGVECSDREVVVLNLKDLCLEGSLAPELMNLVHIKSIILRNNSFHGTIPEEIVGLKELEILDLGYNNFSGHLDANFGHNILSLAILLLDNNEHLAGFSPKINELKMLSEFQVDENQLINAANKPSCSERSIKWRARENEGPRRMLEYRELHRRPFHYHRNHTSPLYRPSSSLPPSVTEVPLVPSPDSPNQNASDSPNQNASDSPDQNASDSPPQSVLSKKNQVPIFAGVIIGSAVFLVISTIGIYLCKTNKVSIVKPWTTGISGQLQKALVTGVPKLKRIDLEVACEDFSNVIGKSPIGTLYKGTLSSGVEIAVASVSLTLSKTWTKNLEAQFKNKIDTLSKVNHRNFVNLIGYCEEEEPFTRMLVFEYAPNGTLFEHLHVKEAEHLNWGLRLRIVTGMAYCLQYMHGLDPPVALTNLSSSTVHLTDDHAAKISDLSFSRETDSSEKKPDGRKDIDIDMMQSTSPASNVYSFGVLLFEIVTGRIPYSLDNSSAENWAAHYLKWDKPMKEMVDATLASYQENQVEQVAELIKDCVDPDSEKRPRMNEVSERLREITKMSSEFVVPKLSPLWWAELEISSA 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02241 646 MobiDBLite consensus disorder prediction 226 284 - -
Vifa1g02241 646 Pfam Protein tyrosine and serine/threonine kinase 357 618 IPR001245 GO:0004672|GO:0006468
Vifa1g02241 646 SUPERFAMILY L domain-like 34 189 - -
Vifa1g02241 646 Gene3D Ribonuclease Inhibitor 29 212 IPR032675 -
Vifa1g02241 646 MobiDBLite consensus disorder prediction 230 284 - -
Vifa1g02241 646 Gene3D Transferase(Phosphotransferase) domain 1 437 631 - -
Vifa1g02241 646 Gene3D Phosphorylase Kinase; domain 1 328 436 - -
Vifa1g02241 646 ProSiteProfiles Protein kinase domain profile. 354 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02241 646 SUPERFAMILY Protein kinase-like (PK-like) 338 618 IPR011009 -
Vifa1g02241 646 FunFam Inactive receptor-like serine/threonine-protein kinase 328 436 - -
Vifa1g02241 646 MobiDBLite consensus disorder prediction 503 523 - -
Vifa1g02241 646 FunFam Leucine-rich repeat receptor-like kinase 34 148 - -
Vifa1g02241 646 Pfam Leucine rich repeat N-terminal domain 31 73 IPR013210 -
Vifa1g02241 646 PANTHER PROTEIN MALE DISCOVERER 2 14 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02241 Vifa-Chr1 360416204 360419243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02241 30 621 Receptor kinase-like Gene Family AT1G48480 25.882 3.51e-42 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vifa1g02241 PK_Tyr_Ser-Thr 2.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02241 - - gmx:100820416 785.023