Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02234 ATGAATGATCATAGATCAAAGATGATGATAATATCTCCAGGCTTATTACCAACTGAATCATTACTGGATTCATTGGTTTTAATCTCCAATGAAGTTAGTTCAATTGAAAATTTTCCATTAGTACAAATAAAAAATGTATCTTCCATGATAAGAAGGATCAAGCTTCTTTCATCATTGTTTGAAGAGATTCAAGAATCCGATACACCGCTTCCGCCTTCGTCGATTCTTTGTTTCACAGAACTCTTTTCCATGATCACAAGAGTGAAGATTCTGATTCAAGAATGCAAAGATAGAAGCTCTCTTTGGAGTCTAATACAATTAGAATTCGTTTCGAATCAGTTTTTCGTGCTTGTGAAAGAATTCGGAAGGGCTTTTGATATTCTTCCTTTGAATTTGCTTCATGTGACAAATGATATAAAGGAGCAGATTGAGCTTTTGCATAGACAAGCTAAGAGAGTTGAAGTTGAATTGTTTATTGATCCTAGAGAGGTTCAAAGAAGAGAAAAGCTTTTGGAAGTAATGTCGAAGAATTGCTTGCAGAACAAGAAAACTAATAAAGGGTTTATTGATTTTGTGAAAGTTGAAGAGATAATGAGTAGCATTGGTTTGAGAACATTATCGGATTACGTCGAGGAAATATCGAAATTAGAGGTTGAAGCACAGAATCAAGCGGGGACGGGAGGACTAATCGTGGTCTCGAATATAAACAATCTCATGCTGCTCGTTTCGTATACGAAATCAATGGTATTCAGAAACGAAGACGAATCAGAAGAGTGTAGGCCATTATCTATGTTTCTATACAACAAAACTAAAATGCATGATAACGAAAGTACTTTTTTATCCTCATCTTCTTCTCGGTCGATGGTTAGTATTCCGGACGAATTTCGCTGTCCGATTTCACTAGACCTAATGAGGGATCCTGTGATTGTTTCATCAGGACATACTTATGATCGAGTTTCGATTGCGGAGTGGATAAACTCGGGTCACAATACTTGTCCTAAAAGTGGACAAAGACTAATTCACACTGCTCTCATACCAAACTATGCATTGAAGAGTCTTGTTCATCAATGGTGCTACGAAAACAATGTCTCGATGAACGAAAATAACAGTAGTAGCAAAAGGCACAAGAATGAGAGTGCAATTGATCACATTTCAGCAAACAAAGCATCAAAAGATGCTGTCAAAATGACAGCAGAGTTTCTTGTTGGAAAGTTAGCAACTGGTTCGACAGATATCCAAAGACAATCCGCGTACGAGATTCGCCTCCTCGCGAAAACTGGTATGGACAACCGAAGAATCATAGCCGAGGTAGGCGCGATTCCGTTTCTAGTAACACTTTTAGTATCTAAAGATTCAAGAATCCAAGAACACGTGGTGACAGCGTTATTCAACCTATCGATCTACGACAATAACAAGATTCTAATCATGGCTGCGGGAGCTATTGATAACATAGTCGAAGTACTCGAGTCGGGGAAAACAATGGAAGCGCGAGAAAATGCTGCAGCAGCTATATATAGTTTATCAATGATAGATGATTGTAAAGTGCAAATTGGAGCAAGTTCTAAGGCAATACCTGCATTAGTAGGACTATTAAAAGAAGGTACACCAATTGGAAAAAAAGATGCTGCTATTGCATTGTTTAATCTTGCAGTTTATAATCCTAACAAGTTAAGCATTGTTAAAAGTGGAGCAGTTACTTTACTTGTTGAGGTGTTGATGGATGATAAAGCTGGGATAACCGACGATTCGTTGGCCGTGCTGGCCGTGTTGCTAGGTTGTTCTCAAGGGTTGGAAGAGATAAAGAATAGTAAGAGTTTGGTGCCAATTCTTATTGATCTTTTGAGATTTGGATCAGTGAAAGGGAAGGAAAATGCAATAACACTTTTGCTTGGATTGTGTAAAGAAGAAGGAGAATTGGTTGCAAGGAGATTGTTGGCAAATCCAAGGAGTATTCCTTCTCTACAAAGTTTGGCTGGTGATGGTTCTTTGAGAGCTAGGAGAAAAGCTGATGCATTGCTTAGGTTGCTTAATAGGTGTTGTTCTCAACCTCATCATTCTTTGTGA 2064 0.3818 MNDHRSKMMIISPGLLPTESLLDSLVLISNEVSSIENFPLVQIKNVSSMIRRIKLLSSLFEEIQESDTPLPPSSILCFTELFSMITRVKILIQECKDRSSLWSLIQLEFVSNQFFVLVKEFGRAFDILPLNLLHVTNDIKEQIELLHRQAKRVEVELFIDPREVQRREKLLEVMSKNCLQNKKTNKGFIDFVKVEEIMSSIGLRTLSDYVEEISKLEVEAQNQAGTGGLIVVSNINNLMLLVSYTKSMVFRNEDESEECRPLSMFLYNKTKMHDNESTFLSSSSSRSMVSIPDEFRCPISLDLMRDPVIVSSGHTYDRVSIAEWINSGHNTCPKSGQRLIHTALIPNYALKSLVHQWCYENNVSMNENNSSSKRHKNESAIDHISANKASKDAVKMTAEFLVGKLATGSTDIQRQSAYEIRLLAKTGMDNRRIIAEVGAIPFLVTLLVSKDSRIQEHVVTALFNLSIYDNNKILIMAAGAIDNIVEVLESGKTMEARENAAAAIYSLSMIDDCKVQIGASSKAIPALVGLLKEGTPIGKKDAAIALFNLAVYNPNKLSIVKSGAVTLLVEVLMDDKAGITDDSLAVLAVLLGCSQGLEEIKNSKSLVPILIDLLRFGSVKGKENAITLLLGLCKEEGELVARRLLANPRSIPSLQSLAGDGSLRARRKADALLRLLNRCCSQPHHSL 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02234 687 SUPERFAMILY ARM repeat 397 676 IPR016024 -
Vifa1g02234 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 438 480 IPR000225 GO:0005515
Vifa1g02234 687 SMART Ubox_2 294 357 IPR003613 GO:0004842|GO:0016567
Vifa1g02234 687 Pfam U-box domain 291 361 IPR003613 GO:0004842|GO:0016567
Vifa1g02234 687 CDD RING-Ubox_PUB 292 344 IPR045210 -
Vifa1g02234 687 FunFam RING-type E3 ubiquitin transferase 290 364 - -
Vifa1g02234 687 Coils Coil 136 156 - -
Vifa1g02234 687 Gene3D - 378 686 IPR011989 -
Vifa1g02234 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 366 IPR013083 -
Vifa1g02234 687 FunFam RING-type E3 ubiquitin transferase 361 515 - -
Vifa1g02234 687 SUPERFAMILY RING/U-box 279 364 - -
Vifa1g02234 687 ProSiteProfiles U-box domain profile. 290 364 IPR003613 GO:0004842|GO:0016567
Vifa1g02234 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 522 564 IPR000225 GO:0005515
Vifa1g02234 687 PANTHER U BOX DOMAIN-CONTAINING 44 681 - -
Vifa1g02234 687 SMART arm_5 468 509 IPR000225 GO:0005515
Vifa1g02234 687 SMART arm_5 593 634 IPR000225 GO:0005515
Vifa1g02234 687 SMART arm_5 511 551 IPR000225 GO:0005515
Vifa1g02234 687 SMART arm_5 552 592 IPR000225 GO:0005515
Vifa1g02234 687 SMART arm_5 427 467 IPR000225 GO:0005515
Vifa1g02234 687 Pfam Armadillo/beta-catenin-like repeat 429 466 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02234 Vifa-Chr1 359911420 359913483 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02234 20 682 U-box Gene Family AT3G46510 37.838 4.46e-131 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02234 - - tpra:123924117 1133.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02234 1 359911420 359913483 Vifa1g02234 1 359911420 359913483 ECH