Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02232 ATGAAAGGTTATGAACCAAGGTCAAGTTCCTCTTGTGCAGCCTGCAAATTCCTGAAAAGAAGATGCATACCAAATTGTATATTTGCACCCTACTTTCGCTCCGACGAGTGCAAGAAATTCGCGAAAGTCCACAAAGTTTTTGGAGCAAGCAATGTGAGCAAGATTCTGATTGAAGTTCCAGAGGAACAGAGGGAAGAAACTGTGAATTCTTTGGCTTATGAAGCTGATGCTAGGCTTAAAGATCCTGTTTATGGATGCATAGGTGCTATAGCAATTTTGCAAAGGAAGATGGTTGAACTTCAACATGATCTTGCTGTTGCTAAGGATAGGCTCGCTTGTTGCGCTGCTGTTGCTGCTACTGCTGCTGCTACCACTCCGAGTTCTTCTTCCAATGATTTGATGAATTCTAATGTTAGTTTGCCGCCTTTTCCTGAGTTTTTCTCTTGCAGTGATTTCAATGATAATTTTAGTCACACTTCTTCGTCTCAATCGTTTAGTCGAAACGAAACCGTGGAAGATATCTTCCAAATTCCTTATATATTTTGA 546 0.4066 MKGYEPRSSSSCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREETVNSLAYEADARLKDPVYGCIGAIAILQRKMVELQHDLAVAKDRLACCAAVAATAAATTPSSSSNDLMNSNVSLPPFPEFFSCSDFNDNFSHTSSSQSFSRNETVEDIFQIPYIF 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02232 181 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Vifa1g02232 181 Coils Coil 90 110 - -
Vifa1g02232 181 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Vifa1g02232 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02232 Vifa-Chr1 359440269 359440814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02232 1 117 AS2 family AT3G11090 78.632 2.60e-65 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa1g02232 LOB 1.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02232 - - gmx:100777635 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02232 1 359440269 359440814 Vifa1g02232 1 359440269 359440814 ECH