Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02229 ATGGACCAACCTCTTCATCATCTTCAAGAAACCAAACCCACCGCCATCACCGTTGCTACAACCACTCCAAGCGAAACATCTAACAACAGCACTGATAACAGCAACAGTAGCAACAACACCAACACCAACAACAGCAGCACTATTAAGAATCGTAAATGCAAAGGTAAAGGTGGACCTGATAACAACAAATTCAGATACCGTGGTGTTAGACAACGTAGTTGGGGTAAATGGGTTGCTGAAATTCGTGAGCCTCGTAAACGTACTCGTAAATGGCTTGGCACTTTCTCAACTGCTGAAGATGCTGCTAAAGCTTATGATCGTGCTGCTATTATTCTCTACGGTTCTAGGGCTCAGCTCAATCTTCAATCCTCTGGTTCTTCTTCTAATTCTTCTTCTCAAAATGATTCATCTTCTTTGAACCGTAACTCGTCTTCTACTTCTGGAAATACTCTCCGTCCTTTACTTCCTCGTCCTTCTGGTTTTTCTCTTTACAATAATCTCGTACCTTTTGGTGTCTACAATAACTTCAACCATCAGCAGCATCATCAACAACAACCGGTTTTCGATAATAGCATTCATCATCATCATCATCAACAACTGGTGCAAGTGCAACTTCAACAACAACAGCAACAATATAATCAACAACAGATACAAGATTTTGAGCAACATGCAAGTGGCGGTTCGACTTCTGTTAGGTCAATTACCTCGTACCAGAATATACAATGTGTTTATAATGATCAAGAACAACATGCAGAAGGTGTTTTGAATCAGCAACAGAAGAATACTAATAATAATGTTCAGAATTGTGATGTGGTTGAGGGAATTATGAGCAATTCAAATTTGATGGGGTCATCAGGTTTTGATGGAACAGTGGTGGATCCAGATCCAGAAGGTATTTGTGTCGGTTCTCCAAATTCTATGTGGCCTTTGACAAGTGATTTATGGGATTACAATGATCCTAACTTCTTTGATTTTTGA 978 0.3988 MDQPLHHLQETKPTAITVATTTPSETSNNSTDNSNSSNNTNTNNSSTIKNRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAAKAYDRAAIILYGSRAQLNLQSSGSSSNSSSQNDSSSLNRNSSSTSGNTLRPLLPRPSGFSLYNNLVPFGVYNNFNHQQHHQQQPVFDNSIHHHHHQQLVQVQLQQQQQQYNQQQIQDFEQHASGGSTSVRSITSYQNIQCVYNDQEQHAEGVLNQQQKNTNNNVQNCDVVEGIMSNSNLMGSSGFDGTVVDPDPEGICVGSPNSMWPLTSDLWDYNDPNFFDF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02229 325 MobiDBLite consensus disorder prediction 53 67 - -
Vifa1g02229 325 FunFam Ethylene-responsive transcription factor 2 65 123 - -
Vifa1g02229 325 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 18 272 - -
Vifa1g02229 325 MobiDBLite consensus disorder prediction 13 51 - -
Vifa1g02229 325 CDD AP2 65 118 IPR001471 GO:0003700|GO:0006355
Vifa1g02229 325 Pfam AP2 domain 65 113 IPR001471 GO:0003700|GO:0006355
Vifa1g02229 325 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Vifa1g02229 325 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Vifa1g02229 325 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Vifa1g02229 325 SUPERFAMILY DNA-binding domain 65 122 IPR016177 GO:0003677
Vifa1g02229 325 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Vifa1g02229 325 MobiDBLite consensus disorder prediction 1 67 - -
Vifa1g02229 325 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
Vifa1g02229 325 MobiDBLite consensus disorder prediction 121 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02229 Vifa-Chr1 358793444 358794421 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02229 51 325 AP2-EREBP Transcription Factor Family AT2G40220 42.105 9.51e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g02229 AP2 2.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02229 K09286 - qsu:112015561 189.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02229 1 358793444 358794421 Vifa1g02229 1 358793444 358794421 ECH