Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02225 ATGGAGGAACCACAACCTGGTTTTCGTTTCTATCCAACAGAAGAAGAGTTAGTTGGCTTCTATCTACACAACCAGCTAGAAGGAGAAAAGCAAGATGACATCAATAGAGTCATCCCTGTCATTGATATCAATGGCAAAGAGCCATGGAATCTTCCAACATTTGCAGGGGAACGGTGTCGTGGAGAAACGGAGCAATGGTTTTTCTTTTCACCGAGACAAGAAAGAGAGATGAGAGGAGGAAGACCGAATAGAACAACATCTTGTGGATATTGGAAAGCTACTGGTTCTCCTAGCTATGTTTACTCTTCGAACAACAAAGTGATTGCGATAAAGAAAACCATGGTGTTTTACAAAGGGAAAGCTCCTTATGGAAGGAAAACTAAATGGAAGATGCATGAATATAAAGCCATTGAACATTTTGACTCGTCTAATACAAACCCTCCTAAGTTGAGACATGAATTCAGCTTGTGTCGCATTTATGTGATATCGGGAAGCTTTAGTTCCTTCGATCGTCGACCATTAGAGAGACCAAGAGTGGAGTTACAACCTGATCATAGTGATTCAACAAGTGCTAAACAAGTTGTATCAGATATTGATGGATCAAATCTGCATGCAACTTTCCATTCGGAAGGAGTAGGAAGAGATCATGATGGTGTTGTTATGGGAGGCTCGAGTGGTACAAATTGGAATGATGTAGTGAATAATGGGGTTGATGAATCTGAACCTCTTTGGGAATGGGAACAACTAAATTGGTTCTAA 759 0.4058 MEEPQPGFRFYPTEEELVGFYLHNQLEGEKQDDINRVIPVIDINGKEPWNLPTFAGERCRGETEQWFFFSPRQEREMRGGRPNRTTSCGYWKATGSPSYVYSSNNKVIAIKKTMVFYKGKAPYGRKTKWKMHEYKAIEHFDSSNTNPPKLRHEFSLCRIYVISGSFSSFDRRPLERPRVELQPDHSDSTSAKQVVSDIDGSNLHATFHSEGVGRDHDGVVMGGSSGTNWNDVVNNGVDESEPLWEWEQLNWF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02225 252 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 180 - -
Vifa1g02225 252 ProSiteProfiles NAC domain profile. 4 162 IPR003441 GO:0003677|GO:0006355
Vifa1g02225 252 SUPERFAMILY NAC domain 5 160 IPR036093 GO:0003677|GO:0006355
Vifa1g02225 252 Gene3D NAC domain 13 165 IPR036093 GO:0003677|GO:0006355
Vifa1g02225 252 Pfam No apical meristem (NAM) protein 6 135 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02225 Vifa-Chr1 358471866 358472839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02225 2 251 NAC Transcription Factor Family AT5G22380 53.360 1.65e-84 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g02225 NAM 7.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02225 - - gmx:100784960 357.451