Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02220 ATGTCGCAAACCGGTAAGCCATTCGACTGGAGCTTCGATCCAGAAACCGAAGATCAAATCATCCCCATAAAAGGCCGAAAAATCTTCTTCTTCATCGCAGTCTTCTCCATCATCCTCCTCTTCACCGCCATCTTCCTCTGCGCGCGATGGATCTTCCGCAACCGCGCAATTCTCACACCAAACGTCACTCCGTTACAGACATTACCATACTCTTCATCTTCACCGTCAGAAGGACTCGACGCCGACGCGATCAAGAAGCTTCCTATCGTATTACATCAATCCGATTCTTCCAACCGCGCGGTGGAAGAAACCGAGTGCTGTATCTGTTTAAGCGCGTTTAGAGATGGCGAGAAGGTGAAACTGTTGCCGGTATGTAATCACTGTTTTCACTGTGAGTGTGTTGACTCGTGGCTCGTGAATCGTTCGAGTTGTCCTTTGTGTAGAGCTTCGCTTATAACTGATTCATCTTTTCCAAAGATTTTGATTCAAGAACCACCGATATATAATTATCCAATCTGA 519 0.4644 MSQTGKPFDWSFDPETEDQIIPIKGRKIFFFIAVFSIILLFTAIFLCARWIFRNRAILTPNVTPLQTLPYSSSSPSEGLDADAIKKLPIVLHQSDSSNRAVEETECCICLSAFRDGEKVKLLPVCNHCFHCECVDSWLVNRSSCPLCRASLITDSSFPKILIQEPPIYNYPI 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02220 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 153 IPR013083 -
Vifa1g02220 172 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Vifa1g02220 172 CDD RING-H2_EL5-like 105 148 - -
Vifa1g02220 172 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 28 154 - -
Vifa1g02220 172 Pfam Ring finger domain 105 148 IPR001841 -
Vifa1g02220 172 SUPERFAMILY RING/U-box 97 157 - -
Vifa1g02220 172 SMART ring_2 106 147 IPR001841 -
Vifa1g02220 172 FunFam RING-H2 finger protein ATL66 71 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02220 Vifa-Chr1 358222901 358223419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02220 15 156 C3H Transcription Factor Family AT3G11110 41.611 3.35e-29 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02220 - - gmx:100794554 190.274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01705 2 441386823 441387347 Vifa1g02220 1 358222901 358223419 PCT