Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g02220 | ATGTCGCAAACCGGTAAGCCATTCGACTGGAGCTTCGATCCAGAAACCGAAGATCAAATCATCCCCATAAAAGGCCGAAAAATCTTCTTCTTCATCGCAGTCTTCTCCATCATCCTCCTCTTCACCGCCATCTTCCTCTGCGCGCGATGGATCTTCCGCAACCGCGCAATTCTCACACCAAACGTCACTCCGTTACAGACATTACCATACTCTTCATCTTCACCGTCAGAAGGACTCGACGCCGACGCGATCAAGAAGCTTCCTATCGTATTACATCAATCCGATTCTTCCAACCGCGCGGTGGAAGAAACCGAGTGCTGTATCTGTTTAAGCGCGTTTAGAGATGGCGAGAAGGTGAAACTGTTGCCGGTATGTAATCACTGTTTTCACTGTGAGTGTGTTGACTCGTGGCTCGTGAATCGTTCGAGTTGTCCTTTGTGTAGAGCTTCGCTTATAACTGATTCATCTTTTCCAAAGATTTTGATTCAAGAACCACCGATATATAATTATCCAATCTGA | 519 | 0.4644 | MSQTGKPFDWSFDPETEDQIIPIKGRKIFFFIAVFSIILLFTAIFLCARWIFRNRAILTPNVTPLQTLPYSSSSPSEGLDADAIKKLPIVLHQSDSSNRAVEETECCICLSAFRDGEKVKLLPVCNHCFHCECVDSWLVNRSSCPLCRASLITDSSFPKILIQEPPIYNYPI | 172 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g02220 | 172 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 69 | 153 | IPR013083 | - | |
Vifa1g02220 | 172 | ProSiteProfiles | Zinc finger RING-type profile. | 106 | 148 | IPR001841 | - | |
Vifa1g02220 | 172 | CDD | RING-H2_EL5-like | 105 | 148 | - | - | |
Vifa1g02220 | 172 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 28 | 154 | - | - | |
Vifa1g02220 | 172 | Pfam | Ring finger domain | 105 | 148 | IPR001841 | - | |
Vifa1g02220 | 172 | SUPERFAMILY | RING/U-box | 97 | 157 | - | - | |
Vifa1g02220 | 172 | SMART | ring_2 | 106 | 147 | IPR001841 | - | |
Vifa1g02220 | 172 | FunFam | RING-H2 finger protein ATL66 | 71 | 153 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g02220 | Vifa-Chr1 | 358222901 | 358223419 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g02220 | 15 | 156 | C3H Transcription Factor Family | AT3G11110 | 41.611 | 3.35e-29 | 103 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g02220 | - | - | gmx:100794554 | 190.274 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa2g01705 | 2 | 441386823 | 441387347 | Vifa1g02220 | 1 | 358222901 | 358223419 | PCT |