Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02214 ATGATTAGCTCGAATTCCAACGGCGATGACGAGAGCGGCGACAAAGTGAGAGGCTCATGGAGTCCGCAAGAGGATGACACATTGAGGAGATTGGTGAAAGAATACGGTCCGCGAAACTGGTCTGTCATCAGCAACGGAATCCCCGGCCGTTCTGGGAAATCCTGCCGTCTGCGGTGGTGCAATCAGCTGAGTCCCGACGTTCAACACCGCGCTTTTACCCCCGAGGAAGACAACATCATAATCCAAGCGCACGCGGTTCACGGCAACAAATGGGCGACGATTTCTCGTCTCCTCCCTGGTCGAACCGACAACGCGATAAAAAACCACTGGAACTCCACCCTCCGCCGTCGTCTCACGGAGGCGCCGCTGACTCCTTCCCCCGTGAGTATCGGGAAGCGTCCTCCAAACGGTTATAACGATTTGTTAGATCTCCGTTATCATCGTTATAAACGGCCTTGTTTAGAGAATAACAACGGTTCACGTTCACGTGACGGTGAAGAAACGGTTACGGAAGAAGAAGACGTTGGTAACGATGTTGCCGTTATGACGCCGTTGAGTTTGTTTCCGCCTGGTGAGAAATTGTTGAAGGAAGAGAAAGAGAAAAAAGAAGAAATGAATAACGGTGTTAAGTTGTTGGGAAATGATAGTTTGAGGTCGATTATTCAGCGCATGATAGCAGAGGAAGTTAGGAATTATATTGATAACATGCGCTTTGATGGGTTTCAACATGCTCCTCATTCAACACATCGAAAGTGA 756 0.4907 MISSNSNGDDESGDKVRGSWSPQEDDTLRRLVKEYGPRNWSVISNGIPGRSGKSCRLRWCNQLSPDVQHRAFTPEEDNIIIQAHAVHGNKWATISRLLPGRTDNAIKNHWNSTLRRRLTEAPLTPSPVSIGKRPPNGYNDLLDLRYHRYKRPCLENNNGSRSRDGEETVTEEEDVGNDVAVMTPLSLFPPGEKLLKEEKEKKEEMNNGVKLLGNDSLRSIIQRMIAEEVRNYIDNMRFDGFQHAPHSTHRK 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02214 251 MobiDBLite consensus disorder prediction 154 173 - -
Vifa1g02214 251 Gene3D - 71 118 - -
Vifa1g02214 251 CDD SANT 19 61 IPR001005 -
Vifa1g02214 251 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Vifa1g02214 251 Coils Coil 195 215 - -
Vifa1g02214 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Vifa1g02214 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 63 IPR017930 -
Vifa1g02214 251 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Vifa1g02214 251 CDD SANT 71 114 IPR001005 -
Vifa1g02214 251 Pfam Myb-like DNA-binding domain 17 63 IPR001005 -
Vifa1g02214 251 Pfam Myb-like DNA-binding domain 71 113 IPR001005 -
Vifa1g02214 251 Gene3D - 16 68 - -
Vifa1g02214 251 PANTHER MYB PROTEIN-RELATED 17 176 - -
Vifa1g02214 251 MobiDBLite consensus disorder prediction 1 23 - -
Vifa1g02214 251 ProSiteProfiles Myb-like domain profile. 12 63 IPR001005 -
Vifa1g02214 251 SMART sant 16 65 IPR001005 -
Vifa1g02214 251 SMART sant 68 116 IPR001005 -
Vifa1g02214 251 FunFam Transcription factor MYB44 71 117 - -
Vifa1g02214 251 FunFam MYB transcription factor 17 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02214 Vifa-Chr1 357125525 357126280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02214 14 119 MYB Transcription Factor Family AT4G37260 73.585 8.27e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g02214 Myb_DNA-binding 2.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02214 - - cam:101514420 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02214 1 357125525 357126280 Vifa1g02214 1 357125525 357126280 ECH