Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g02214 | ATGATTAGCTCGAATTCCAACGGCGATGACGAGAGCGGCGACAAAGTGAGAGGCTCATGGAGTCCGCAAGAGGATGACACATTGAGGAGATTGGTGAAAGAATACGGTCCGCGAAACTGGTCTGTCATCAGCAACGGAATCCCCGGCCGTTCTGGGAAATCCTGCCGTCTGCGGTGGTGCAATCAGCTGAGTCCCGACGTTCAACACCGCGCTTTTACCCCCGAGGAAGACAACATCATAATCCAAGCGCACGCGGTTCACGGCAACAAATGGGCGACGATTTCTCGTCTCCTCCCTGGTCGAACCGACAACGCGATAAAAAACCACTGGAACTCCACCCTCCGCCGTCGTCTCACGGAGGCGCCGCTGACTCCTTCCCCCGTGAGTATCGGGAAGCGTCCTCCAAACGGTTATAACGATTTGTTAGATCTCCGTTATCATCGTTATAAACGGCCTTGTTTAGAGAATAACAACGGTTCACGTTCACGTGACGGTGAAGAAACGGTTACGGAAGAAGAAGACGTTGGTAACGATGTTGCCGTTATGACGCCGTTGAGTTTGTTTCCGCCTGGTGAGAAATTGTTGAAGGAAGAGAAAGAGAAAAAAGAAGAAATGAATAACGGTGTTAAGTTGTTGGGAAATGATAGTTTGAGGTCGATTATTCAGCGCATGATAGCAGAGGAAGTTAGGAATTATATTGATAACATGCGCTTTGATGGGTTTCAACATGCTCCTCATTCAACACATCGAAAGTGA | 756 | 0.4907 | MISSNSNGDDESGDKVRGSWSPQEDDTLRRLVKEYGPRNWSVISNGIPGRSGKSCRLRWCNQLSPDVQHRAFTPEEDNIIIQAHAVHGNKWATISRLLPGRTDNAIKNHWNSTLRRRLTEAPLTPSPVSIGKRPPNGYNDLLDLRYHRYKRPCLENNNGSRSRDGEETVTEEEDVGNDVAVMTPLSLFPPGEKLLKEEKEKKEEMNNGVKLLGNDSLRSIIQRMIAEEVRNYIDNMRFDGFQHAPHSTHRK | 251 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g02214 | 251 | MobiDBLite | consensus disorder prediction | 154 | 173 | - | - | |
Vifa1g02214 | 251 | Gene3D | - | 71 | 118 | - | - | |
Vifa1g02214 | 251 | CDD | SANT | 19 | 61 | IPR001005 | - | |
Vifa1g02214 | 251 | SUPERFAMILY | Homeodomain-like | 14 | 110 | IPR009057 | - | |
Vifa1g02214 | 251 | Coils | Coil | 195 | 215 | - | - | |
Vifa1g02214 | 251 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 64 | 118 | IPR017930 | - | |
Vifa1g02214 | 251 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 14 | 63 | IPR017930 | - | |
Vifa1g02214 | 251 | ProSiteProfiles | Myb-like domain profile. | 64 | 114 | IPR001005 | - | |
Vifa1g02214 | 251 | CDD | SANT | 71 | 114 | IPR001005 | - | |
Vifa1g02214 | 251 | Pfam | Myb-like DNA-binding domain | 17 | 63 | IPR001005 | - | |
Vifa1g02214 | 251 | Pfam | Myb-like DNA-binding domain | 71 | 113 | IPR001005 | - | |
Vifa1g02214 | 251 | Gene3D | - | 16 | 68 | - | - | |
Vifa1g02214 | 251 | PANTHER | MYB PROTEIN-RELATED | 17 | 176 | - | - | |
Vifa1g02214 | 251 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Vifa1g02214 | 251 | ProSiteProfiles | Myb-like domain profile. | 12 | 63 | IPR001005 | - | |
Vifa1g02214 | 251 | SMART | sant | 16 | 65 | IPR001005 | - | |
Vifa1g02214 | 251 | SMART | sant | 68 | 116 | IPR001005 | - | |
Vifa1g02214 | 251 | FunFam | Transcription factor MYB44 | 71 | 117 | - | - | |
Vifa1g02214 | 251 | FunFam | MYB transcription factor | 17 | 68 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g02214 | Vifa-Chr1 | 357125525 | 357126280 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g02214 | 14 | 119 | MYB Transcription Factor Family | AT4G37260 | 73.585 | 8.27e-55 | 177 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Vifa1g02214 | Myb_DNA-binding | 2.1e-16 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g02214 | - | - | cam:101514420 | 356.295 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa1g02214 | 1 | 357125525 | 357126280 | Vifa1g02214 | 1 | 357125525 | 357126280 | ECH |