Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02209 ATGACGATGGAAATTGTTTCTAAAGATGCTCAGATGTCTATTGCTGCTTCTTCTATGTTTCCTGGTTTCAGATTCTGTCCTACAGATGAAGAGTTGATTTCTTATTACCTCAGGAAAAAGCTAGATGGTCATGAAGAAAGTGTTCAAGTTATTTCTGAAGTTGAGCTTTGTACTTATGAACCTTGGGATTTACCAGCCAAATCATTCATTCAATCCGATAACGAGTGGTTTTTCTTCTCTCCCCGTGGACGAAAGTATCCAAATGGTTCACAAAGTAAAAGAGCTACTGAATGTGGATATTGGAAAGCCACTGGAAAAGAGCGGAACGTGAAATCAGGTGCTAATGTCATAGGTACGAAGCGAACTTTGGTGTTTCACTTAGGTCGTGCACCTAAAGGCGAAAGGACGGAATGGATTATGCATGAATACTGCATCAGTGACAGGTCTCCGGATTCTTTGGTCGTTTGTCGCCTTAAGAGGAACACCGAGTTCCGTCTGAACGATGCTTCAAATAGAGCCTCTTCAAGTCAAATAAACCAAGTACATTCACATGAAAGTGATTGCGCTGTCTCAGAAGGCCCTACTGAACAAAGGGAAATCGGCGTATGTGAACAAGAAAAGGAGGTTGATGGCAGTTCCAAGCGGGGAAGCAGCAGTTACGGTTCACCTTCAATGGAACAAATTGATTCCGTGTCTGAATCTAATCAGCGGCCAGCTACAGACGCTACATTAACAGACTCTTCGGGCCACCTAAAGATGGATGAAGAAGATTGTTATGCTGAGATACTAAAGAATGATATCATAAAATTAGATGAATCATCAATGTCTCAAGGGACTCAAGCAAGACCAAATGACCTTCAACAGCCTCATCCATGCCAAGGCACCGCACAACGGAGAATACGATTAAGGGTTCCAAAATCAACACATGCTCAACCAGGCGTTCGATTCTCCAGAACAATGCACCAGTCAAAGTGTAGCTTCTTTGGCCGAATGACCAACCATTCGATAATAGTTGCTTTCTTTCTTTTCACTCTCTTGGCTATATTTTTCTGGTCTTTACTGGATGGTCACAAACAAGTTAGAAATATTGTAGGAAAATTCCACGCGTAA 1110 0.4207 MTMEIVSKDAQMSIAASSMFPGFRFCPTDEELISYYLRKKLDGHEESVQVISEVELCTYEPWDLPAKSFIQSDNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERNVKSGANVIGTKRTLVFHLGRAPKGERTEWIMHEYCISDRSPDSLVVCRLKRNTEFRLNDASNRASSSQINQVHSHESDCAVSEGPTEQREIGVCEQEKEVDGSSKRGSSSYGSPSMEQIDSVSESNQRPATDATLTDSSGHLKMDEEDCYAEILKNDIIKLDESSMSQGTQARPNDLQQPHPCQGTAQRRIRLRVPKSTHAQPGVRFSRTMHQSKCSFFGRMTNHSIIVAFFLFTLLAIFFWSLLDGHKQVRNIVGKFHA 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02209 369 MobiDBLite consensus disorder prediction 169 186 - -
Vifa1g02209 369 MobiDBLite consensus disorder prediction 169 250 - -
Vifa1g02209 369 Gene3D NAC domain 28 186 IPR036093 GO:0003677|GO:0006355
Vifa1g02209 369 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 236 - -
Vifa1g02209 369 MobiDBLite consensus disorder prediction 199 213 - -
Vifa1g02209 369 ProSiteProfiles NAC domain profile. 19 161 IPR003441 GO:0003677|GO:0006355
Vifa1g02209 369 MobiDBLite consensus disorder prediction 214 247 - -
Vifa1g02209 369 Pfam No apical meristem (NAM) protein 21 144 IPR003441 GO:0003677|GO:0006355
Vifa1g02209 369 SUPERFAMILY NAC domain 8 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02209 Vifa-Chr1 356202231 356203970 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02209 6 285 NAC Transcription Factor Family AT2G27300 52.143 3.05e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g02209 NAM 1.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02209 - - tpra:123896537 644.81