Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02202 ATGTCTTTCAACATCAACAAGAAAAAGTTCTTGAGAACACTCTTTTCATCTAACAAAAGTTGTGGTTGCCTCAAAATAAAACCCTCTAATGTCCTTGAACCCTCTATAAAACCTAAAATCTCAATTTATCAAAATCAAAATAAAAACCCTAGCAGCGCCACTTCTTCCGCCTCCACCACCAACGATGATGATAAAGTTTTGGCTTTCAGTCCCGTCTGTGAAGCCAAAATTTCTCATCATAACAACAATACTATTTTAAAATTAGGTACGAAACTCGTCGATAGTATTGCGGTCGAGAAGGAGTCTGACGATCCGTACGATGATTTCCGAAACTCGATACTTCAAATGATATTGGAAAGAAAGATCTACGCAGAAAAGGATCTTGAAGAGCTTCTTGAATGCTTTCTTCAGCTTAACGCAAAGTGTCACCACCAAGTCATCGTTGAAGCCTTCATGGAGATATGTGAAGAAATATTCCCTAAGAAACTTCAAGGCGAAGGTGAAGAGTCTCAAAGGAATAATCAGATTAATGGAAAGAGTTAG 543 0.3794 MSFNINKKKFLRTLFSSNKSCGCLKIKPSNVLEPSIKPKISIYQNQNKNPSSATSSASTTNDDDKVLAFSPVCEAKISHHNNNTILKLGTKLVDSIAVEKESDDPYDDFRNSILQMILERKIYAEKDLEELLECFLQLNAKCHHQVIVEAFMEICEEIFPKKLQGEGEESQRNNQINGKS 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02202 180 Pfam Transcriptional repressor, ovate 102 159 IPR006458 -
Vifa1g02202 180 NCBIfam uncharacterized plant-specific domain TIGR01568 96 157 IPR006458 -
Vifa1g02202 180 ProSiteProfiles OVATE domain profile. 98 157 IPR006458 -
Vifa1g02202 180 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 54 159 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02202 Vifa-Chr1 354124081 354124623 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vifa1g02202 Ovate 2.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02202 - - psat:127086665 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02202 1 354124081 354124623 Vifa1g02202 1 354124081 354124623 ECH
Vifa1g02202 1 354124081 354124623 Vifa6g00367 6 151103987 151104502 PCT