Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02201 ATGTGCAGTGGTTCAAAAAGTAAAATTTCTTCATCAGATTACGCCATGGAGAGTAAGCTTGAGAAGGGTATTCACAACTCATCGGTATTGCTTGAATTGGCTGCTTCTGATGATTTCGATGCTTTCGTGAGAGAAGTGGAAGAGAAGGGTTTGGATGTGAATGAAGAAGGGCTTTGGTATGGTAGAAGAATTGGGTTGAAGGAGATGGGAGCTGAGAAGAGGACTCCTCTCATGATTGCTTCTTTGTTTGGAAGCATCAAGGTGGTTAAGTATATTGTTCTGACTGGAAAGGTTGATGTCAATGGAGTTTGTGGTTCTGATATGGTTACTGCTCTTCATTGTGCTGTTGCCGGTGGTTCGGAATTATCGTTTGAGGTTGTCAAGCTTTTGCTTGAGGCTGGGGCCGACGCTGATTGTGTTGATGCTGGTGGGAATAAACCGGTTGATCTGATTGTGCCTGCTTTTAATACCTTGTCCAAATCGCGCAGGAAGCCGTTGGAGCTGTTTCTTAGAGGTGATGTAAGTGCCGAAATCGTCCAAGGGGAGATGGATCTTCCTTTGAAAAAAGATGGTGGTGATAAGAAAGAATATCCTATTGATATATCGTTGCCGGATATAAACAACGGTGTATATGGATCAGATGAGTTTAGGATGTATAGTTTCAAGGTGAAGCCGTGCTCAAGGGCTTATTCTCACGATTGGACTGAGTGTCCTTTTGTTCATCCGGGTGAGAATGCAAGGAGGAGAGACCCAAGGAAATACCCTTACAGCTGTGTTCCTTGCCCGGAGTTTCGCAAAGGTTCCTGCCAGAAAGGGGATTCTTGCGAGTATGCGCATGGTGTTTTTGAGTCATGGCTACATCCTGCACAATACCGAACAAGGCTTTGTAAGGACGAGACTGGCTGCAATAGAAAAGTCTGCTTCTTTGCTCACAAGCCTGAAGAGTTGCGTCCCGTGTATGCTTCCACTGGGTCCGCAATGCCTTCACCGAAATCATATTCAGCTAGTGCACTTGACATGACATCGATGAGTCCATTGTCTCTTAGTTCTTCAGCTATGCCTATGTCAACCGTGTTGACGCCACCCATGTCTCCCTTGGCGGGTGCATCATCTCCCAAGGGTGGAAACTTGTGGCAGAACAAAATAAACCTCACTCCACCATCGTTGCAGCTCCCAGGTAGCCGATTGAAGAGTGCTCTGAGCGCCAGGGATCTAGATCTTGAGATGGAACTGCTCGGTCTGGATAGTCCCCGTCGTCAACAACAGCACCAACAACAACAACAACAAATGATCGAAGAGATTGCGAGAATCTCTTCCCCATCTTTCCGGAGCAACGAATTCAGTAGGATTGTTGATTTGAATCCAACTAACCTTGATGACCTGTTAGCATCTGCTGATCCTAATTTACTATCTCAACTACATGGACTTTCCATGCAACCTTCAACACCCACACAACAAATGCAATCTCCAACTGCCATGCAGATGCGTCAAAACATGAACATGAGCCAAAACATGAACATGAACCACCTCCGCGCAAGTTATCCATCCAATAACACACCTTCCTCTCCGGTAAGAAAACCCTCAGCATATGGGTTTGATTCATCAGCTGCAGTGGCAGCTGCAGTGATGAATTCCAGGTCTGCCGCCTTTGCAAAGCAACGCAGCCAGAGTTTCATTGACCGCGGCGCTTCAACTCACCATCTCGGGCTTTCTCCACCTTCCAACCCTTCCTGCAGGGTGTCCTCTGGCCTTTCAGATTGGGGTTCCCCCACTGGGAAACTCAATTGGAGCGTAAACGGAGACGAGCTCAACAAGCTAAGGAAATCAGCTTCCTTCGGGTTCAAAAACAACGTGGCACCATCAACTGCATCATCCCAACAGGGTGAGCCTGATGTCTCTTGGGTTAACTCATTGGTCAAGGATGTCCCCTCTGAGAATTCTAACATGTATGGCTCCGAGAAGACCAGGCAACAGCAGCAGCAGCAACAGCAGTATGATCTGAATAGAGAAATGCTTCCACCATGGGTGGAGCAGCTGTACGTAGAGCAGGAGCAGATGGTTGCATGA 2067 0.4727 MCSGSKSKISSSDYAMESKLEKGIHNSSVLLELAASDDFDAFVREVEEKGLDVNEEGLWYGRRIGLKEMGAEKRTPLMIASLFGSIKVVKYIVLTGKVDVNGVCGSDMVTALHCAVAGGSELSFEVVKLLLEAGADADCVDAGGNKPVDLIVPAFNTLSKSRRKPLELFLRGDVSAEIVQGEMDLPLKKDGGDKKEYPIDISLPDINNGVYGSDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCNRKVCFFAHKPEELRPVYASTGSAMPSPKSYSASALDMTSMSPLSLSSSAMPMSTVLTPPMSPLAGASSPKGGNLWQNKINLTPPSLQLPGSRLKSALSARDLDLEMELLGLDSPRRQQQHQQQQQQMIEEIARISSPSFRSNEFSRIVDLNPTNLDDLLASADPNLLSQLHGLSMQPSTPTQQMQSPTAMQMRQNMNMSQNMNMNHLRASYPSNNTPSSPVRKPSAYGFDSSAAVAAAVMNSRSAAFAKQRSQSFIDRGASTHHLGLSPPSNPSCRVSSGLSDWGSPTGKLNWSVNGDELNKLRKSASFGFKNNVAPSTASSQQGEPDVSWVNSLVKDVPSENSNMYGSEKTRQQQQQQQQYDLNREMLPPWVEQLYVEQEQMVA 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02201 688 MobiDBLite consensus disorder prediction 563 591 - -
Vifa1g02201 688 ProSiteProfiles Ankyrin repeat profile. 107 142 IPR002110 GO:0005515
Vifa1g02201 688 ProSiteProfiles Ankyrin repeat region circular profile. 107 141 - -
Vifa1g02201 688 FunFam Zinc finger CCCH domain-containing protein 66 213 281 - -
Vifa1g02201 688 Gene3D - 257 318 - -
Vifa1g02201 688 Gene3D - 17 164 IPR036770 -
Vifa1g02201 688 Pfam Ankyrin repeats (3 copies) 67 139 IPR002110 GO:0005515
Vifa1g02201 688 SUPERFAMILY Ankyrin repeat 29 149 IPR036770 -
Vifa1g02201 688 SMART ANK_2a 107 139 IPR002110 GO:0005515
Vifa1g02201 688 SMART ANK_2a 72 102 IPR002110 GO:0005515
Vifa1g02201 688 ProSiteProfiles Zinc finger C3H1-type profile. 255 282 IPR000571 GO:0046872
Vifa1g02201 688 MobiDBLite consensus disorder prediction 643 665 - -
Vifa1g02201 688 SMART c3hfinal6 290 313 IPR000571 GO:0046872
Vifa1g02201 688 SMART c3hfinal6 255 281 IPR000571 GO:0046872
Vifa1g02201 688 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 280 IPR000571 GO:0046872
Vifa1g02201 688 PANTHER UNKEMPT FAMILY MEMBER 32 642 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02201 Vifa-Chr1 353894621 353896687 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02201 25 683 C2H2 Transcription Factor Family AT5G12850 40.192 1.95e-146 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa1g02201 Ank_2 2e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02201 - - gmx:100783376 967.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02201 1 353894621 353896687 Vifa1g02201 1 353894621 353896687 ECH