Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02195 ATGGCTAGCGTCGAAGCTGTTCTAGAATTTCTAAGAAAAAATGGATTATCAGAAGCAGAATCAGCTCTCAGACAAGACATCATTGAAAAAAACAATCTCGCTTCCTTTGACTTCGAGAAATTCTTCTTTCCGATGATCCCTCCGCCTCCTCCGGTCAAACTCCGGTCAACTTCACGGTCGTCGGAGTTTCCAGGAAAATTCTCCAAATCGAACTCTGTCTCTTCTGATGAACAGTTTGTTAGCATCGGTTCACCTAGTTCTCGTGTTTCTTCTTCAGAATTTATCAATCCATATGGAATCAATTCCTCATCTCAGACACAGAACGATTCTGAATCTTCATCGGATAGATTGTCACAATTTGGCACAGCGCGCGATTATCACGAATTCGATATGCAACATGAACCGTATTGGTATAATGAAAATGATGATGATGATTTCATGACTCCTAGTTTTGATGGACCAGATTTCTTTGGATGTGAAACTGAAGATAAGTTTGTTACAGAAAATCAAGAAAATTCTCTCGATCTTCGTTACGGCTACAAAGAAATACAATTTGAGAGAAACGGGGGTTGCGTGGACGAGCCAATGAAGCAATGCATTTGTAATCATTCATCTGTAGTTGATGAAAATGCGAGCTATTCAAGAGATTACTGTCACGGGGCCGAGAACGATGCTGATGGGCATTCTTGTGAAGTTCCTATAAACTTTAGCTACTCTGATTTGAAGGAAATCGATCTGAATGATTTTCATTTGAAGGGTATTATTGATTCTTTTGATTCTGCTCCGCTGGTTACCGTGAAGCAAAGTATCGATTCATACACTAAAAACGACAGCAGTGAGAGGTATAAAGATTCATACGACTTAACAATCACAGTTGCTGAAACAGATCTATCGAATGGGATCGACCCCTATGAAGTAAGAGATGATCGAGAGTTGAGTGAAGATTTCCAAGACCAGGATGTTGCCGCAGATGGAGAGGATAATAATACCGATGATGAGCTCTTAAAATACATTCAAGAGGATGAATACGAAGTATTTGAGCTAAGAATCGTACATAGAAAGAACAGGACTGGATTTGAAGAAAATAAAGAAGTGCCGATTGTGCTAAATACAGTCATGGCTGGAAGATACTATGTGACAGAATATCTCGGTTCAGCTGCATTCAGTAGGGTTGTTCAAGCGCACGATCTTCAGACAGGAGTTGATGTTTGTTTGAAGATTATTAAAAACGACAAAGATTTCTTTGATCAAAGCCTAGATGAAATCAAACTTCTAAAACTTGTCAATAAGCACGACCCGGGAGATAAACACCACATATTGCGTCTTTATGATTATTTCTACCATCAGGAGCATTTATTCATCGTGACCGAACTTCTGCGAGCAAACTTGTATGAATTTCAGAAATTCAACCAAGAATCTGGTGGGGAAGCATATTTCACATTACATAGACTACAGCTCATTACTCGACAGTGTTTGGAGGCTTTACAATATTTGCATAGCTTGGGAATCGTTCATTGCGACCTGAAGCCCGAAAATGTTCTAATAAAAAGTTACAAAAAATGTGAAATCAAGATTATTGATCTCGGAAGCAGTTGCTTTAAAACAGACAATTTGTGCCTATATGTACAATCTCGATCTTATAGAGCTCCCGAAGTCATGTTAGGCCTTCAATATAATGAAAAGATTGATATCTGGTCGCTCGGCTGTATTTTGGCTGAGCTATGCTCTGGTGAAGTACTCTTTCCAAATGACGCAGTCGTGATGATTCTCGCGCGCATGATCGGAATGTTTGGTCCTTTTGATATGGAGATGTTGGTGAAAGGACAGGAAACACACAAGTACTTCACGAAAGAATATGACATTTACTTTGTAAATGAGGAGACAGATCAACTAGAGTACATAATTCCAGAAGAGACATCATTGGAGCAGCATCTACGGATCACGGATACCATGTTTATCGACTTCGTCGGATACTTACTTAACACCAACCCGAAAAGAAGACCAACTGCAAGACAGGCACTAAAACATCCATGGCTTTCCTATATTTACAAGTCCATGTAA 2061 0.395 MASVEAVLEFLRKNGLSEAESALRQDIIEKNNLASFDFEKFFFPMIPPPPPVKLRSTSRSSEFPGKFSKSNSVSSDEQFVSIGSPSSRVSSSEFINPYGINSSSQTQNDSESSSDRLSQFGTARDYHEFDMQHEPYWYNENDDDDFMTPSFDGPDFFGCETEDKFVTENQENSLDLRYGYKEIQFERNGGCVDEPMKQCICNHSSVVDENASYSRDYCHGAENDADGHSCEVPINFSYSDLKEIDLNDFHLKGIIDSFDSAPLVTVKQSIDSYTKNDSSERYKDSYDLTITVAETDLSNGIDPYEVRDDRELSEDFQDQDVAADGEDNNTDDELLKYIQEDEYEVFELRIVHRKNRTGFEENKEVPIVLNTVMAGRYYVTEYLGSAAFSRVVQAHDLQTGVDVCLKIIKNDKDFFDQSLDEIKLLKLVNKHDPGDKHHILRLYDYFYHQEHLFIVTELLRANLYEFQKFNQESGGEAYFTLHRLQLITRQCLEALQYLHSLGIVHCDLKPENVLIKSYKKCEIKIIDLGSSCFKTDNLCLYVQSRSYRAPEVMLGLQYNEKIDIWSLGCILAELCSGEVLFPNDAVVMILARMIGMFGPFDMEMLVKGQETHKYFTKEYDIYFVNEETDQLEYIIPEETSLEQHLRITDTMFIDFVGYLLNTNPKRRPTARQALKHPWLSYIYKSM 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02195 686 CDD PKc_DYRK_like 377 679 - -
Vifa1g02195 686 Gene3D Phosphorylase Kinase; domain 1 372 458 - -
Vifa1g02195 686 SMART serkin_6 377 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02195 686 FunFam Putative serine/threonine-protein kinase dyrk2 371 458 - -
Vifa1g02195 686 FunFam Serine/threonine-protein kinase ppk15 456 680 - -
Vifa1g02195 686 ProSiteProfiles Protein kinase domain profile. 377 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02195 686 Pfam Protein kinase domain 379 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02195 686 Gene3D Transferase(Phosphotransferase) domain 1 431 679 - -
Vifa1g02195 686 SUPERFAMILY Protein kinase-like (PK-like) 366 683 IPR011009 -
Vifa1g02195 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672|GO:0006468
Vifa1g02195 686 PANTHER DUAL SPECIFICITY PROTEIN KINASE 105 679 - -
Vifa1g02195 686 MobiDBLite consensus disorder prediction 95 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02195 Vifa-Chr1 352486440 352489826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02195 374 674 MAP Kinase Gene Family AT5G19010 31.790 9.32e-33 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Vifa1g02195 Pkinase 5.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02195 - - gmx:100795722 1031.17