Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02190 ATGGTTTCTAGAATGGATCCGTACGAGATCATGGAACCCATAAGTGGCGGTGCATTTGGTGCTGCCATTCTCGTTAATCACAAGTTGGAGAAGAAAAGATACGTGTTGAAGAAAATTAGGCTTGCGCGGAAAACTGAACGGTGTAGAAAATCTGCTCATCAAGAGATGGATCTTATTGCTCGGATTAAGCACCTTTACATTGTGGAATTCAAGGAGGCTTGGGTTGACAAGGGTTTCTATGTCTGCATTGTTACTGGATATTGTCAAGGTGGAGACATAGCAGCATTGATGAAAAAATCAAATGGAGTTTACTTTTCTGACGAGGATCATGATGTTTGCCTGGGAGACTTTGGACTTGCTAAGACACTAAAAGCGGATGATTTGACTTCTTCGGTATGTGCGAAATTAGGAACTCGGTGTTGTATATATGAGATGGCTGCTCACCGCCCTGCTTTCAAAGCTTTTGATATGGACGGCTTGATAAGCAAGATAAGCTGTCCCTCTATTGGTGCTTTGCCTTCCTGTTATTCCCCATCCTTGTTTTAG 546 0.4267 MVSRMDPYEIMEPISGGAFGAAILVNHKLEKKRYVLKKIRLARKTERCRKSAHQEMDLIARIKHLYIVEFKEAWVDKGFYVCIVTGYCQGGDIAALMKKSNGVYFSDEDHDVCLGDFGLAKTLKADDLTSSVCAKLGTRCCIYEMAAHRPAFKAFDMDGLISKISCPSIGALPSCYSPSLF 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02190 181 Pfam Protein kinase domain 8 100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02190 181 SUPERFAMILY Protein kinase-like (PK-like) 5 179 IPR011009 -
Vifa1g02190 181 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Vifa1g02190 181 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 107 180 - -
Vifa1g02190 181 ProSiteProfiles Protein kinase domain profile. 8 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02190 181 SMART serkin_6 8 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02190 Vifa-Chr1 351853267 351856764 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02190 9 99 MAP Kinase Kinase Gene Family AT4G26070 30.769 2.78e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vifa1g02190 Pkinase 2.1e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02190 K08857 - thj:104799564 265.388