Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02186 ATGGTTTCTAGAATGGATCAGTACGATATCATGGAACAGATCGGTCGTGGTGCATTTGGTGCTGCGATTCTCGTTAATCACAAGCTGGAGAAGAAAAGATACGTGTTGAAGAAAATTAGGCTTGCCCGGCAAACCCAACGGTGTAGAAAATCTGCTGATCATGAGATGGATCTTATTGCTCGGATTAAGCACCCTTACATTGTGGAATTCAAGGAGGCTTGGGTTGACAAGGGTTGCTTTGTCTGCATTGTTACTGGATATTGTGAAGGTGGAGACATAGCAGCATTGATGAAAAAATCAAATGGGGTTTACTTTCCTGAGGAGAAACTCTGCAAATGGATTACTCAATTACTGTTGGCAGTAGAATACCTGCATTCAAAATTTGTTTTACACCGTGACCTAAAGTGTTCTAACATCTTTCTCACCAAGGATCATGATGTTCGCCTGGGGGACTTTGGGCTTGCTAAGACACTAAAAGCGGATGATTTGACTTCTTCGGTCGTTGGAACTCCCAACTACATGTGCCCTGAACTGTTTGCCGATATTCCTTATGGATTCAAATCTGATATTTGGTCACTAGGGTGTTGTATATATGAGATGGCTGCTCACCGCCCTGCTTTCAAAGCTTTTGATATGGGCGGATTGATAAGCAAGATAAACCGTCCCTCTATTGGTGCTTTGCCTCCCTGTTATTCCCCATCCTTGAAAATACTGATAAAAGGGATGCTGAGGAAAAACCCTGAGCACCGTCCAACAGCATCCGAAATCTTAAAGCACCCTTATTTGCAGCCTTATGTACATCAATATTGTTCACCTCTCTGTCCTCCAGCAGCAGCCTCTTTTCCTGAAAAGCCAATTTCTGTTGTCCATGATCCTCGAAAAAATATGGTACAAAGTGAAAACAGCAATAGTTTGAGAGGTGGCAAAGGTAATTTGATGTTAAATGAGCGAAACATTGCAAAAGCTGCACCAAAGGGTGATGACAAAATCACCGAGGTAGACATAGCATTGACTGATGATGATGGGTCTGAGCTTCTAATGCATGCTGGAGAACGAAATAGATCCAGCAATTTCAATGCCAAAACCGATAAACAGGAGGTTACGAAGAAACCTCACATTGAACACCATTCTAATGCTGGATCTAGGCAACCAAAAACAACTAAGAATGTAATGATGGCACCAAAACATGAAAAAGTTAGAGAGACAATCCATCCAATGAGAGGCAATGGGGTGATGGCCGGTGGTACATCAATACACAAAATAAATAACGAGACATTGTCTAAATTGCCCAGACCTGATTTTGGTGTTACTGGTTTGAAGTGTAATTTAGATGTGCCAACTATTGCACCTTCAAAAGCAACCCTTAATCATGCAAAACAAATCCAGGGGTCTCATGCTTCTAAACATCAGTTACCAATGGAATCTACACCTAAAACAAAACCTCGACATAAGGTAACATTGCCATCTGGTCCTATGAAACAAGTAGTAGCAGAAGGTGGAGCTCCTGGAAGGCCAAAACAAAAAACTCCTCCAAGTCTTCTTAAGCCACCCTCGTGTCTGAGAAGTATAAGGCTGGCTGAAAATGATATCCCAAATGCAGCAAAGGATACAGGAAGGTTAGATCCAAATAAAATAGCTCAGGAGTCTAAGATGGTCCATCATCAGCTGACTAATAGTCATCCACCACATGCTTCTAGAGAGCCTTTGAAGGCTATTGAAAGTAGCACCAAAGGATTGCAAACAGACAGCAGCAAATCCGTCTCATCATCAGTCTCTTTTCAAGGATCCGAACTTTCTGACTTTGCAACCACTTATATTGATATGAGTGAGCCAACACTTCCTGAACATGAGAGTTTTAATCTCACTGAAAAAATGAAATCGCGTCCAGACATCAGTGGACCTGCTGAAAATTTGTCTGGTGAAACCTCTACCTTTACATCAAATTTTCAGAGTTCCATTACTACTAATGAGAACTTAAGTCCCAGGTTAACTCTGGATCACTCAGATCAACATTCTGAGGTAATGTATGCTTCTGATGACATTTTTCTCATAAATCTAACAACTAAATCTGCTGCCTGTGAGTCCGATGGTCCCTCTGCCGAAGTCAAACAAGAAATCAAATCCCTTCAAGATATTTCTGAGGGAATAGCTTCAATCAATTCTCTCGATTCACTTACCATTTCTGAAGAAAAGTCTGTTTGTGAAGTTAGTCTAGTAAGTGTGTCAAATAATAAGCCTCATAATTTTCACGAGCCGAAACTTATGGGCATATTGACTCATGATGACAAATTCAAGGTGAGGGAAAGAATGTCATCAGTGGCTGAAACTGCTCCTCTGGTTATATCTAACAAAATTTCAAGCCAAAAAGGTTTACAAGAAGAGAAGGAAATGTTTCTACAGGATCTAGAAACTGAAAGGCCAGCGTCTGGCCATCTTCCCCCAGCTCTTCATGATGTCATCCATGTTATACGCCATACCAGTTACCATATGGGAAGTGAGCTTTCAGTAATGGAATCAATGGAGATGGGAGCTACAGATGTACATGTTGGTAAACTTATCAAAATTATAAAGGATGATTTAGAAATAAGAAACGCCGGAACTCTATGGTCCCTTAAATCTTCAAATTGCTCTGAACCTACCACTGATAATTTGGGAATCAGAAACTTGAGCTTGAAGTCAAGTATTTTTGACCATCCTGGTGTTGAAAAGAAAGATGCAAACAATCCTGCTTCTCTAGTTTCAAAACCTGATTCCACTAAATATACCAAATATAGCCCTCCAACATCCGAAGAGGAAATGCCAGAAAAAGAATCTTTGGATGTTAAATCTTCCAAGCAGAGAGCTGAGGCACTTGAGGGCCTATTAGAATTGTGTGCAGATTTGCTGCAGCAAAATAGATTGGAGGAACTTGCAGTTGTTCTGAAACCCTTTGGAAAAGATAAGGTGTCCTCAAGGGAGACAGCTATTTGGTTGGCCAAAAGTCTAAAAGGATTGATGTTTGAGGAAAGTGGGAGTCGTAGTTAA 3024 0.4087 MVSRMDQYDIMEQIGRGAFGAAILVNHKLEKKRYVLKKIRLARQTQRCRKSADHEMDLIARIKHPYIVEFKEAWVDKGCFVCIVTGYCEGGDIAALMKKSNGVYFPEEKLCKWITQLLLAVEYLHSKFVLHRDLKCSNIFLTKDHDVRLGDFGLAKTLKADDLTSSVVGTPNYMCPELFADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMGGLISKINRPSIGALPPCYSPSLKILIKGMLRKNPEHRPTASEILKHPYLQPYVHQYCSPLCPPAAASFPEKPISVVHDPRKNMVQSENSNSLRGGKGNLMLNERNIAKAAPKGDDKITEVDIALTDDDGSELLMHAGERNRSSNFNAKTDKQEVTKKPHIEHHSNAGSRQPKTTKNVMMAPKHEKVRETIHPMRGNGVMAGGTSIHKINNETLSKLPRPDFGVTGLKCNLDVPTIAPSKATLNHAKQIQGSHASKHQLPMESTPKTKPRHKVTLPSGPMKQVVAEGGAPGRPKQKTPPSLLKPPSCLRSIRLAENDIPNAAKDTGRLDPNKIAQESKMVHHQLTNSHPPHASREPLKAIESSTKGLQTDSSKSVSSSVSFQGSELSDFATTYIDMSEPTLPEHESFNLTEKMKSRPDISGPAENLSGETSTFTSNFQSSITTNENLSPRLTLDHSDQHSEVMYASDDIFLINLTTKSAACESDGPSAEVKQEIKSLQDISEGIASINSLDSLTISEEKSVCEVSLVSVSNNKPHNFHEPKLMGILTHDDKFKVRERMSSVAETAPLVISNKISSQKGLQEEKEMFLQDLETERPASGHLPPALHDVIHVIRHTSYHMGSELSVMESMEMGATDVHVGKLIKIIKDDLEIRNAGTLWSLKSSNCSEPTTDNLGIRNLSLKSSIFDHPGVEKKDANNPASLVSKPDSTKYTKYSPPTSEEEMPEKESLDVKSSKQRAEALEGLLELCADLLQQNRLEELAVVLKPFGKDKVSSRETAIWLAKSLKGLMFEESGSRS 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02186 1007 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02186 1007 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02186 1007 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Vifa1g02186 1007 MobiDBLite consensus disorder prediction 357 381 - -
Vifa1g02186 1007 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Vifa1g02186 1007 MobiDBLite consensus disorder prediction 574 588 - -
Vifa1g02186 1007 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02186 1007 SUPERFAMILY Protein kinase-like (PK-like) 4 287 IPR011009 -
Vifa1g02186 1007 MobiDBLite consensus disorder prediction 899 937 - -
Vifa1g02186 1007 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 956 - -
Vifa1g02186 1007 MobiDBLite consensus disorder prediction 456 518 - -
Vifa1g02186 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Vifa1g02186 1007 MobiDBLite consensus disorder prediction 626 646 - -
Vifa1g02186 1007 CDD STKc_Nek 7 262 - -
Vifa1g02186 1007 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
Vifa1g02186 1007 MobiDBLite consensus disorder prediction 911 926 - -
Vifa1g02186 1007 Gene3D Transferase(Phosphotransferase) domain 1 90 308 - -
Vifa1g02186 1007 MobiDBLite consensus disorder prediction 552 588 - -
Vifa1g02186 1007 MobiDBLite consensus disorder prediction 354 387 - -
Vifa1g02186 1007 MobiDBLite consensus disorder prediction 456 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02186 Vifa-Chr1 351296156 351301845 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02186 14 263 MAP Kinase Kinase Kinase AT1G53570 32.157 6.35e-35 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vifa1g02186 Pkinase 3.9e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02186 K08857 - gmx:100818943 1252.65