Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02185 ATGGCAATGGTTTCTAGAATGGATCAGTACGATATCATGGAACAGATCGGTCGTGGTGCATTTGGTGCTGCGATTCTCGTTAATCACAAGCTGGAGAAGAAAAGATACGTGTTGAAGAAAATTAGGCTTGCCCGGCAAACCCAACGGTGTAGAAAATCTGCTGATCATGAGATGGATCTTATTGCTCGGATTAAGCACCCTTACATTGTGGAATTCAAGGAGGCTTGGGTTGACAAGGGTTGCTTTGTCTGCATTGTTACTGGATATTGTGAAGGTGGAGACATAGCAGCATTGATGAAAAAATCAAATGGGGTTTACTTTCCTGAGGAGAAACTCTGCAAATGGATTACTCAATTACTGTTGGCAGTAGAATACCTGCATTCAAAATTTGTTTTACACCGTGACCTAAAGTGTTCTAACATCTTTCTCACCAAGGATCATGATGTTCGCCTGGGGGACTTTGGGCTTGCTAAGACACTAAAAGCGGATGATTTGACTTCTTCGGTCGTTGGAACTCCCAACTACATGTGCCCTGAACTGTTTGCCGATATTCCTTATGGATTCAAATCTGATATTTGGTCACTAGGGTGTTGTATATATGAGATGGCTGCTCACCGCCCTGCTTTCAAAGCTTTTGATATGGGCGGATTGATAAGCAAGATAAACCGTCCCTCTATTGGTGCTTTGCCTCCCTGTTATTCCCCATCCTTGAAAATACTGATAAAAGGGATGCTGAGGAAAAACCCTGAGCACCGTCCAACAGCATCCGAAATCTTAAAGCACCCTTATTTGCAGCCTTATGTACATCAATATTGTTCACCTCTCTGTCCTCCAGCAGCAGCCTCTTTTCCTGAAAAGCCAATTTCTGTTGTCCATGATCCTCGAAAAAATATGGTACAAAGTGAAAACAGCAATAGTTTGAGAGGTGGCAAAGGTAATTTGATGTTAAATGAGCGAAACATTGCAAAAGCTGCACCAAAGGGTGATGACAAAATCACCGAGGTAGACATAGCATTGACTGATGATGATGGGTCTGAGCTTCTAATGCATGCTGGAGAACGAAATAGATCCAGCAATTTCAATGCCAAAACCGATAAACAGGAGGTTACGAAGAAACCTCACATTGAACACCATTCTAATGCTGGATCTAGGCAACCAAAAACAACTAAGAATGTAATGATGGCACCAAAACATGAAAAAGTTAGAGAGACAATCCATCCAATGAGAGGCAATGGGGTGATGGCCGGTGGTACATCAATACACAAAATAAATAACGAGACATTGTCTAAATTGCCCAGACCTGATTTTGGTGTTACTGGTTTGAAGTGTAATTTAGATGTGCCAACTATTGCACCTTCAAAAGCAACCCTTAATCATGCAAAACAAATCCAGGGGTCTCATGCTTCTAAACATCAGTTACCAATGGAATCTACACCTAAAACAAAACCTCGACATAAGGTAACATTGCCATCTGGTCCTATGAAACAAGTAGTAGCAGAAGGTGGAGCTCCTGGAAGGCCAAAACAAAAAACTCCTCCAAGTCTTCTTAAGCCACCCTCGTGTCTGAGAAGTATAAGGCTGGCTGAAAATGATATCCCAAATGCAGCAAAGGATACAGGAAGGTTAGATCCAAATAAAATAGCTCAGGAGTCTAAGATGGTCCATCATCAGCTGACTAATAGTCATCCACCACATGCTTCTAGAGAGCCTTTGAAGGCTATTGAAAGTAGCACCAAAGGATTGCAAACAGACAGCAGCAAATCCGTCTCATCATCAGTCTCTTTTCAAGGATCCGAACTTTCTGACTTTGCAACCACTTATATTGATATGAGTGAGCCAACACTTCCTGAACATGAGAGTTTTAATCTCACTGAAAAAATGAAATCGCGTCCAGACATCAGTGGACCTGCTGAAAATTTGTCTGGTGAAACCTCTACCTTTACATCAAATTTTCAGAGTTCCATTACTACTAATGAGAACTTAAGTCCCAGGTTAACTCTGGATCACTCAGATCAACATTCTGAGGTAATGTATGCTTCTGATGACATTTTTCTCATAAATCTAACAACTAAATCTGCTGCCTGTGAGTCCGATGGTCCCTCTGCCGAAGTCAAACAAGAAATCAAATCCCTTCAAGATATTTCTGAGGGAATAGCTTCAATCAATTCTCTCGATTCACTTACCATTTCTGAAGAAAAGTCTGTTTGTGAAGTTAGTCTAGTAAGTGTGTCAAATAATAAGCCTCATAATTTTCACGAGCCGAAACTTATGGGCATATTGACTCATGATGACAAATTCAAGGTGAGGGAAAGAATGTCATCAGTGGCTGAAACTGCTCCTCTGGTTATATCTAACAAAATTTCAAGCCAAAAAGGTTTACAAGAAGAGAAGGAAATGTTTCTACAGGATCTAGAAACTGAAAGGCCAGCGTCTGGCCATCTTCCCCCAGCTCTTCATGATGTCATCCATGTTATACGCCATACCAGTTACCATATGGGAAGTGAGCTTTCAGTAATGGAATCAATGGAGATGGGAGCTACAGATGTACATGTTGGTAAACTTATCAAAATTATAAAGGATGATTTAGAAATAAGAAACGCCGGAACTCTATGGTCCCTTAAATCTTCAAATTGCTCTGAACCTACCACTGATAATTTGGGAATCAGAAACTTGAGCTTGAAGTCAAGTATTTTTGACCATCCTGGTGTTGAAAAGAAAGATGCAAACAATCCTGCTTCTCTAGTTTCAAAACCTGATTCCACTAAATATACCAAATATAGCCCTCCAACATCCGAAGAGGAAATGCCAGAAAAAGAATCTTTGGATGTTAAATCTTCCAAGCAGAGAGCTGAGGCACTTGAGGGCCTATTAGAATTGTGTGCAGATTTGCTGCAGCAAAATAGATTGGAGGAACTTGCAGTTGTTCTGAAACCCTTTGGAAAAGATAAGGTGTCCTCAAGGGAGACAGCTATTTGGTTGGCCAAAAGTCTAAAAGGATTGATGTTTGAGGAAAGTGGGAGTCGTAGTTAA 3030 0.4089 MAMVSRMDQYDIMEQIGRGAFGAAILVNHKLEKKRYVLKKIRLARQTQRCRKSADHEMDLIARIKHPYIVEFKEAWVDKGCFVCIVTGYCEGGDIAALMKKSNGVYFPEEKLCKWITQLLLAVEYLHSKFVLHRDLKCSNIFLTKDHDVRLGDFGLAKTLKADDLTSSVVGTPNYMCPELFADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMGGLISKINRPSIGALPPCYSPSLKILIKGMLRKNPEHRPTASEILKHPYLQPYVHQYCSPLCPPAAASFPEKPISVVHDPRKNMVQSENSNSLRGGKGNLMLNERNIAKAAPKGDDKITEVDIALTDDDGSELLMHAGERNRSSNFNAKTDKQEVTKKPHIEHHSNAGSRQPKTTKNVMMAPKHEKVRETIHPMRGNGVMAGGTSIHKINNETLSKLPRPDFGVTGLKCNLDVPTIAPSKATLNHAKQIQGSHASKHQLPMESTPKTKPRHKVTLPSGPMKQVVAEGGAPGRPKQKTPPSLLKPPSCLRSIRLAENDIPNAAKDTGRLDPNKIAQESKMVHHQLTNSHPPHASREPLKAIESSTKGLQTDSSKSVSSSVSFQGSELSDFATTYIDMSEPTLPEHESFNLTEKMKSRPDISGPAENLSGETSTFTSNFQSSITTNENLSPRLTLDHSDQHSEVMYASDDIFLINLTTKSAACESDGPSAEVKQEIKSLQDISEGIASINSLDSLTISEEKSVCEVSLVSVSNNKPHNFHEPKLMGILTHDDKFKVRERMSSVAETAPLVISNKISSQKGLQEEKEMFLQDLETERPASGHLPPALHDVIHVIRHTSYHMGSELSVMESMEMGATDVHVGKLIKIIKDDLEIRNAGTLWSLKSSNCSEPTTDNLGIRNLSLKSSIFDHPGVEKKDANNPASLVSKPDSTKYTKYSPPTSEEEMPEKESLDVKSSKQRAEALEGLLELCADLLQQNRLEELAVVLKPFGKDKVSSRETAIWLAKSLKGLMFEESGSRS 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02185 1009 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 7 958 - -
Vifa1g02185 1009 Gene3D Transferase(Phosphotransferase) domain 1 92 310 - -
Vifa1g02185 1009 SUPERFAMILY Protein kinase-like (PK-like) 6 289 IPR011009 -
Vifa1g02185 1009 CDD STKc_Nek 9 264 - -
Vifa1g02185 1009 ProSiteProfiles Protein kinase domain profile. 10 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02185 1009 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
Vifa1g02185 1009 MobiDBLite consensus disorder prediction 913 928 - -
Vifa1g02185 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Vifa1g02185 1009 MobiDBLite consensus disorder prediction 458 476 - -
Vifa1g02185 1009 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Vifa1g02185 1009 MobiDBLite consensus disorder prediction 628 648 - -
Vifa1g02185 1009 MobiDBLite consensus disorder prediction 901 939 - -
Vifa1g02185 1009 MobiDBLite consensus disorder prediction 576 590 - -
Vifa1g02185 1009 Pfam Protein kinase domain 10 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02185 1009 MobiDBLite consensus disorder prediction 554 590 - -
Vifa1g02185 1009 MobiDBLite consensus disorder prediction 356 389 - -
Vifa1g02185 1009 FunFam Serine/threonine-protein kinase Nek2 7 89 - -
Vifa1g02185 1009 MobiDBLite consensus disorder prediction 458 520 - -
Vifa1g02185 1009 MobiDBLite consensus disorder prediction 359 383 - -
Vifa1g02185 1009 SMART serkin_6 10 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02185 Vifa-Chr1 351296150 351301845 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02185 16 265 MAP Kinase Kinase Kinase AT1G53570 32.157 6.09e-35 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vifa1g02185 Pkinase 3.9e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02185 K08857 - gmx:100818943 1252.65