Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02184 ATGGCAATGGTTTCTAGAATGGATCAGTACGATATCATGGAACAGATCGGTCGTGGTGCATTTGGTGCTGCGATTCTCGTTAATCACAAGCTGGAGAAGAAAAGATACGTGTTGAAGAAAATTAGGCTTGCCCGGCAAACCCAACGGTGTAGAAAATCTGCTGATCATGAGATGGATCTTATTGCTCGGATTAAGCACCCTTACATTGTGGAATTCAAGGAGGCTTGGGTTGACAAGGGTTGCTTTGTCTGCATTGTTACTGGATATTGTGAAGGTGGAGACATAGCAGCATTGATGAAAAAATCAAATGGGGTTTACTTTCCTGAGGAGAAACTCTGCAAATGGATTACTCAATTACTGTTGGCAGTAGAATACCTGCATTCAAAATTTGTTTTACACCGTGACCTAAAGTGTTCTAACATCTTTCTCACCAAGGATCATGATGTTCGCCTGGGGGACTTTGGGCTTGCTAAGACACTAAAAGCGGATGATTTGACTTCTTCGGTCGTTGGAACTCCCAACTACATGTGCCCTGAACTGTTTGCCGATATTCCTTATGGATTCAAATCTGATATTTGGTCACTAGGGTGTTGTATATATGAGATGGCTGCTCACCGCCCTGCTTTCAAAGCTTTTGATATGGGCGGATTGATAAGCAAGATAAACCGTCCCTCTATTGGTGCTTTGCCTCCCTGTTATTCCCCATCCTTGAAAATACTGATAAAAGGGATGCTGAGGAAAAACCCTGAGCACCGTCCAACAGCATCCGAAATCTTAAAGCACCCTTATTTGCAGCCTTATGTACATCAATATTGTTCACCTCTCTGTCCTCCAGCAGCAGCCTCTTTTCCTGAAAAGCCAATTTCTGTTGTCCATGATCCTCGAAAAAATATGGTACAAAGTGAAAACAGCAATAGTTTGAGAGGTGGCAAAGGTAATTTGATGTTAAATGAGCGAAACATTGCAAAAGCTGCACCAAAGGGTGATGACAAAATCACCGAGGTAGACATAGCATTGACTGATGATGATGGGTCTGAGCTTCTAATGCATGCTGGAGAACGAAATAGATCCAGCAATTTCAATGCCAAAACCGATAAACAGGAGGTTACGAAGAAACCTCACATTGAACACCATTCTAATGCTGGATCTAGGCAACCAAAAACAACTAAGAATGTAATGATGGCACCAAAACATGAAAAAGTTAGAGAGACAATCCATCCAATGAGAGGCAATGGGGTGATGGCCGGTGGTACATCAATACACAAAATAAATAACGAGACATTGTCTAAATTGCCCAGACCTGATTTTGGTGTTACTGGTTTGAAGTGTAATTTAGATGTGCCAACTATTGCACCTTCAAAAGCAACCCTTAATCATGCAAAACAAATCCAGGGGTCTCATGCTTCTAAACATCAGCAGTTACCAATGGAATCTACACCTAAAACAAAACCTCGACATAAGGTAACATTGCCATCTGGTCCTATGAAACAAGTAGTAGCAGAAGGTGGAGCTCCTGGAAGGCCAAAACAAAAAACTCCTCCAAGTCTTCTTAAGCCACCCTCGTGTCTGAGAAGTATAAGGCTGGCTGAAAATGATATCCCAAATGCAGCAAAGGATACAGGAAGGTTAGATCCAAATAAAATAGCTCAGGAGTCTAAGATGGTCCATCATCAGCTGACTAATAGTCATCCACCACATGCTTCTAGAGAGCCTTTGAAGGCTATTGAAAGTAGCACCAAAGGATTGCAAACAGACAGCAGCAAATCCGTCTCATCATCAGTCTCTTTTCAAGGATCCGAACTTTCTGACTTTGCAACCACTTATATTGATATGAGTGAGCCAACACTTCCTGAACATGAGAGTTTTAATCTCACTGAAAAAATGAAATCGCGTCCAGACATCAGTGGACCTGCTGAAAATTTGTCTGGTGAAACCTCTACCTTTACATCAAATTTTCAGAGTTCCATTACTACTAATGAGAACTTAAGTCCCAGGTTAACTCTGGATCACTCAGATCAACATTCTGAGGTAATGTATGCTTCTGATGACATTTTTCTCATAAATCTAACAACTAAATCTGCTGCCTGTGAGTCCGATGGTCCCTCTGCCGAAGTCAAACAAGAAATCAAATCCCTTCAAGATATTTCTGAGGGAATAGCTTCAATCAATTCTCTCGATTCACTTACCATTTCTGAAGAAAAGTCTGTTTGTGAAGTTAGTCTAGTAAGTGTGTCAAATAATAAGCCTCATAATTTTCACGAGCCGAAACTTATGGGCATATTGACTCATGATGACAAATTCAAGGTGAGGGAAAGAATGTCATCAGTGGCTGAAACTGCTCCTCTGGTTATATCTAACAAAATTTCAAGCCAAAAAGGTTTACAAGAAGAGAAGGAAATGTTTCTACAGGATCTAGAAACTGAAAGGCCAGCGTCTGGCCATCTTCCCCCAGCTCTTCATGATGTCATCCATGTTATACGCCATACCAGTTACCATATGGGAAGTGAGCTTTCAGTAATGGAATCAATGGAGATGGGAGCTACAGATGTACATGTTGGTAAACTTATCAAAATTATAAAGGATGATTTAGAAATAAGAAACGCCGGAACTCTATGGTCCCTTAAATCTTCAAATTGCTCTGAACCTACCACTGATAATTTGGGAATCAGAAACTTGAGCTTGAAGTCAAGTATTTTTGACCATCCTGGTGTTGAAAAGAAAGATGCAAACAATCCTGCTTCTCTAGTTTCAAAACCTGATTCCACTAAATATACCAAATATAGCCCTCCAACATCCGAAGAGGAAATGCCAGAAAAAGAATCTTTGGATGTTAAATCTTCCAAGCAGAGAGCTGAGGCACTTGAGGGCCTATTAGAATTGTGTGCAGATTTGCTGCAGCAAAATAGATTGGAGGAACTTGCAGTTGTTCTGAAACCCTTTGGAAAAGATAAGGTGTCCTCAAGGGAGACAGCTATTTGGTTGGCCAAAAGTCTAAAAGGATTGATGTTTGAGGAAAGTGGGAGTCGTAGTTAA 3033 0.4092 MAMVSRMDQYDIMEQIGRGAFGAAILVNHKLEKKRYVLKKIRLARQTQRCRKSADHEMDLIARIKHPYIVEFKEAWVDKGCFVCIVTGYCEGGDIAALMKKSNGVYFPEEKLCKWITQLLLAVEYLHSKFVLHRDLKCSNIFLTKDHDVRLGDFGLAKTLKADDLTSSVVGTPNYMCPELFADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMGGLISKINRPSIGALPPCYSPSLKILIKGMLRKNPEHRPTASEILKHPYLQPYVHQYCSPLCPPAAASFPEKPISVVHDPRKNMVQSENSNSLRGGKGNLMLNERNIAKAAPKGDDKITEVDIALTDDDGSELLMHAGERNRSSNFNAKTDKQEVTKKPHIEHHSNAGSRQPKTTKNVMMAPKHEKVRETIHPMRGNGVMAGGTSIHKINNETLSKLPRPDFGVTGLKCNLDVPTIAPSKATLNHAKQIQGSHASKHQQLPMESTPKTKPRHKVTLPSGPMKQVVAEGGAPGRPKQKTPPSLLKPPSCLRSIRLAENDIPNAAKDTGRLDPNKIAQESKMVHHQLTNSHPPHASREPLKAIESSTKGLQTDSSKSVSSSVSFQGSELSDFATTYIDMSEPTLPEHESFNLTEKMKSRPDISGPAENLSGETSTFTSNFQSSITTNENLSPRLTLDHSDQHSEVMYASDDIFLINLTTKSAACESDGPSAEVKQEIKSLQDISEGIASINSLDSLTISEEKSVCEVSLVSVSNNKPHNFHEPKLMGILTHDDKFKVRERMSSVAETAPLVISNKISSQKGLQEEKEMFLQDLETERPASGHLPPALHDVIHVIRHTSYHMGSELSVMESMEMGATDVHVGKLIKIIKDDLEIRNAGTLWSLKSSNCSEPTTDNLGIRNLSLKSSIFDHPGVEKKDANNPASLVSKPDSTKYTKYSPPTSEEEMPEKESLDVKSSKQRAEALEGLLELCADLLQQNRLEELAVVLKPFGKDKVSSRETAIWLAKSLKGLMFEESGSRS 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02184 1010 SUPERFAMILY Protein kinase-like (PK-like) 6 289 IPR011009 -
Vifa1g02184 1010 CDD STKc_Nek 9 264 - -
Vifa1g02184 1010 ProSiteProfiles Protein kinase domain profile. 10 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02184 1010 Gene3D Transferase(Phosphotransferase) domain 1 92 310 - -
Vifa1g02184 1010 MobiDBLite consensus disorder prediction 577 591 - -
Vifa1g02184 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Vifa1g02184 1010 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Vifa1g02184 1010 MobiDBLite consensus disorder prediction 459 521 - -
Vifa1g02184 1010 MobiDBLite consensus disorder prediction 902 940 - -
Vifa1g02184 1010 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 7 959 - -
Vifa1g02184 1010 MobiDBLite consensus disorder prediction 629 649 - -
Vifa1g02184 1010 MobiDBLite consensus disorder prediction 356 389 - -
Vifa1g02184 1010 MobiDBLite consensus disorder prediction 459 479 - -
Vifa1g02184 1010 Pfam Protein kinase domain 10 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02184 1010 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
Vifa1g02184 1010 MobiDBLite consensus disorder prediction 555 591 - -
Vifa1g02184 1010 FunFam Serine/threonine-protein kinase Nek2 7 89 - -
Vifa1g02184 1010 MobiDBLite consensus disorder prediction 914 929 - -
Vifa1g02184 1010 MobiDBLite consensus disorder prediction 359 383 - -
Vifa1g02184 1010 SMART serkin_6 10 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02184 Vifa-Chr1 351296150 351301845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02184 16 265 MAP Kinase Kinase Kinase AT1G53570 32.157 6.56e-35 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vifa1g02184 Pkinase 3.9e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02184 K08857 - gmx:100818943 1248.8