Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02183 ATGAACAACTTCACAGGTGAAATTCCATATAAACTCGGTCTCAATGGGAACATTCAAGTCCTTGATTTGTCTTCTAATAAACTCACCGGTGTTATTCCACCTCACCTTTGTTCTTCAAACCAGCTTAAGATTTTGATTCTTCTTAACAATTTTCTGTTTGGTCCTATACCACAAGGTTTAGGAACATGTTATAGTCTCACTAGAGTGAGATTAGGAGAGAATTACCTTAATGGCAGTATTCCAGATGGTTTTCTTTATCTTCCTAAGCTGAATTTAGCTGAGTTGAAGAACAATTACTTGTCAGGAACATTGTTAGAAAATGGTAACGCTTCGTCTTCTCTTTGTTTACAACAGCTTGATTTGTCAAACAATGCTTTGTCTGGTCCTTTACCACATTCCCTCTCCAATTTCACTTCGCTTCAAATCCTTTCGCTTACTGGAAACCAATTCTCGGGTCCCATTCCAAGTTCCATTGGAGGACTTAACCAGGTTTTGAAACTTGACCTTAGCAGAAACTTGTTATCAGGTGAAATTCCGCCCCAAATTGGAAACTGTCTTCATCTTACCTATCTTGACATGAGCCAGAACAATCTCTCTGGCTCCATTCCGCCCTTGTTTTCTAACATTCGTATTTTGAATTACTTGAACTTGTCTAGAAACCATTTGAACCAAACCATACCAAAGTCAATAGGAACAATGAAAAGCCTCACAGTTGCTGATTTCTCCTTCAACGAATTCTCTGGAATCAACTCCACACCAGGAAAAAAAACCAATGCGGATTTCAAGCTCATTTTCGCGCTAGGCCTATTGATGTGCTCGTTAGTCTTTGTTATCACAGCGATTATTAAGGCCAAGTCATTCAAAAAGAATGGTCCTGGTTCTTGGAAGATGACTGCCTTTAAAAAGCTCGAGTTCACTGTTTCGGACATCCTCGAATGCGTGAAAGACGGTAACGTGATCGGAAGAGGAGGTGCAGGGATAGTTTACCATGGAAAAATGCCTAATGGTGTGGAAATAGCAGTAAAAAAGCTACTCGGTTTCGGTGCAAATAGCCATGATCATGGTTTTAGAGCTGAAATTCAAACACTTGGAAACATAAGACACAGAAACATAGTGAGACTACTTGCATTCTGTTCAAACAAAGAAACAAATCTTCTTGTGTATGAATACATGAGAAATGGAAGCTTAGGTGAAGCATTGCATGGAAAAAAAGGCGCATTCTTGAGTTGGAACTTTCGGTACAAGATATCTATTGATTCTGCTAAAGGACTATGCTACCTTCACCATGATTGTTCTCCATTGATCCTACACAGAGATGTGAAATCTAACAACATTTTGTTGAGTTCCAATTTCGAAGCACATTTTGAATGA 1371 0.3902 MNNFTGEIPYKLGLNGNIQVLDLSSNKLTGVIPPHLCSSNQLKILILLNNFLFGPIPQGLGTCYSLTRVRLGENYLNGSIPDGFLYLPKLNLAELKNNYLSGTLLENGNASSSLCLQQLDLSNNALSGPLPHSLSNFTSLQILSLTGNQFSGPIPSSIGGLNQVLKLDLSRNLLSGEIPPQIGNCLHLTYLDMSQNNLSGSIPPLFSNIRILNYLNLSRNHLNQTIPKSIGTMKSLTVADFSFNEFSGINSTPGKKTNADFKLIFALGLLMCSLVFVITAIIKAKSFKKNGPGSWKMTAFKKLEFTVSDILECVKDGNVIGRGGAGIVYHGKMPNGVEIAVKKLLGFGANSHDHGFRAEIQTLGNIRHRNIVRLLAFCSNKETNLLVYEYMRNGSLGEALHGKKGAFLSWNFRYKISIDSAKGLCYLHHDCSPLILHRDVKSNNILLSSNFEAHFE 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02183 456 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 283 390 - -
Vifa1g02183 456 ProSiteProfiles Protein kinase domain profile. 314 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02183 456 Pfam Leucine Rich repeat 185 200 IPR001611 GO:0005515
Vifa1g02183 456 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 108 205 - -
Vifa1g02183 456 Pfam Protein kinase domain 316 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02183 456 Pfam Leucine Rich Repeat 17 37 IPR001611 GO:0005515
Vifa1g02183 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Vifa1g02183 456 SUPERFAMILY Protein kinase-like (PK-like) 305 453 IPR011009 -
Vifa1g02183 456 FunFam Leucine-rich repeat receptor protein kinase EMS1 8 107 - -
Vifa1g02183 456 Gene3D Transferase(Phosphotransferase) domain 1 391 455 - -
Vifa1g02183 456 Gene3D Phosphorylase Kinase; domain 1 279 390 - -
Vifa1g02183 456 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 2 454 - -
Vifa1g02183 456 Gene3D Ribonuclease Inhibitor 1 258 IPR032675 -
Vifa1g02183 456 SMART serkin_6 314 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02183 456 SUPERFAMILY RNI-like 2 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02183 Vifa-Chr1 350277834 350279309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02183 2 454 Receptor kinase-like Gene Family AT5G65700 56.592 3.96e-180 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa1g02183 Pkinase 2.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02183 - - hbr:110661583 732.635