Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02182 ATGTTCATTGAAAAACTTTCTAAGTTGATATGTTTTTGTTCAATTATTACACTATGTTATGCTGCAACAAACCCTAATGATCTCAAAGTTTTGAATGATTTTAGAAAAGGATTAGAGAATCCTGAGCTTTTGAAATGGCCAGAAAAAGGAAACAATGATCCATGTGGTCCTCCTTCATGGCCTTATGTCTTCTGTTCGGAAGATAGAGTCACTCAGATTCAAGCTAAGAATCTTGGTCTCATAGGAACATTACCTCAAAACTTTAACCAACTCACAGAACTCTACAATTTAGGTCTTCAACGAAACAATCTCACTGGGATTTTACCGAGTTTTAGTGGCTTAAAATCAACTCAATGCACATTGTCATCTCTCACAAATCTAAGGCTTTCAAACAACAGACTTTCCGGTTCTATCGATGTTATTGCTTCGATGGTTTTCGTAACGCAGATTTGGCTACACGGAAACAAGTTTTCAGAAATGAACCTTGAGTTACTTGTTTTGAACAATAACATGCTAATGGGTCCAATACCGAAGTTTAAAGCTGCAAACTTTACTTATGATGATAATCTCTTTTGCCAAACTGAGCCTGGAGTTGAATGTTCTCAACAGGTTACATCACTTTTGGATTTTCTGGCTAATCTGAATTATCCGTCGTTTCTAATTTCCGATTGGTCAGGTAATAAACCATGCACAAGTAGCACAGGACCATGGTTTGGATTGAGCTGCAATTCCTCTGAGGTATCTTTAATTAATCTACCAAAGCATAAGCTTAATGGTAGTTTGAGTCCTTCACTTGCGAAGTTAGAATCACTTCTCGAAATTAGGCTTGCTGGAAATAATATATCTGGCGTAGTTCCGAGTGATTTTACTAAATTGAAATCCTTGAGATTGTTGGATTTGAGTGACAATAATATTGAATCTCCTTTGCCGAATTTTCGTGATGGTGTGAAGGTTATTACCATTGGTAATCCTTCTCTTAATAATCAAACTGGAGGGAGTGTCAGTCCTGTTATTAGCGGCCCGAGTTTGGAAAACAACTCGACACACTCTTCAGCTTCATATAATCAGCCAGTTCCAAGCTCACATCACAGAAGATTCAAGACAGTAGCAATATTGGTTGGAGTTGCAGTGTTTGCAGTTGTAGTGTCTTTTATTGTTTATCTCTTTTTATGTTTCTTTAAGAAGGATAAAAACTCCTTGGATGCTCTGAGTTCCATTGTGGTTCACCCTCGAGATTCATCTGATCCATACAACGGAATTAAAATTGCTGTTTCAAGCAATAACACTGGAAGCTTAACAGAAAAATCTGGGACGAGTTCTCTGACTAACTTAAGTGGTGAAACTAAAAACTCTCACCTAATTGAGGTTGGAAACCATGTCATATCGGTGCAAATGCTACGCAAGGTTACTAACGATTTTGCATCGGAAAATGAGCTAGGCCGTGGTGGATTTGGAACTGTTTACAAAGGTGAATTAGAAGATGGAACCAAGATAGCAGTAAAGAGAATGGAGAATGGAACTATCGGAAATAAGGGAGTGGAAGAGTTTCAAGCTGAAATAGATGTTCTTTCTAAGGTTCGTCATCGACATTTGGTATCTCTTTTGGGGCATTCCATTGAAGGAAATGAAAGACTTCTAGTTTATGAATATATGCCACTTGGTGCTCTAAGTCAGCATCTTTTTCATTGGAAAAAATTGGACTTAAAGCCTTTGTCTTGGTCACAAAGGCTTGTAATAGCACTAGATGTTGCTAGAGCAATGGAATATCTTCACGGTCTTACCCGCGAGACCTTCATTCACAGAGATCTCAAGTCTTCTAATATTCTACTAGGTCACGATTTTCGTGCAAAAGTTTCGGATTTCGGTCTTGTGAAGCTTGCCCCAGATGGTGAAAAATCTGTAGTAACAAAACTTGCTGGGACTTTCGGTTACTTAGCCCCGGAATATGCAGTGATGGGGAAAATCACCACAAAAGTTGATGTATTCAGCTACGGTGTCGTGTTAATGGAGCTTCTAACCGGTCTAACGGCCCTTGATGAGAGCCGGTCAGAGGAAATCCGATACTTGGCCGAATGGTTTTGGCGAGTTAAATCGAACAACGAAAAGCTTATGGCTGCAATTGATCCAGCTTTGGAACAAAACGAAGAATCATGTGAAAGTATAACTATTGTTGCAGAACTTGCTGGACATTGCACTGCTAGGGAAGCATACCATAGGCCAGATATGAGTCATGCTGTCAACGTACTATCAGCCTTAGTGGAGAAATGGCGACCGGTTTCCGATGAATTTAACGATTTGTATTCTGCCGTTGACGGCACTCGACCACTTCCTCAAATGTTGAAAATTTGGAAGGATGCAGAAAACAATGAGTTTAGTTATAGTAGTACTTCTGCTAGTCTTGAAGACAGTAAAGGAAGTATTGCACTGAGGCCTAATGGATTTGCTGACTCTTTCACTTCTGCTGATGCTAGATGA 2475 0.3935 MFIEKLSKLICFCSIITLCYAATNPNDLKVLNDFRKGLENPELLKWPEKGNNDPCGPPSWPYVFCSEDRVTQIQAKNLGLIGTLPQNFNQLTELYNLGLQRNNLTGILPSFSGLKSTQCTLSSLTNLRLSNNRLSGSIDVIASMVFVTQIWLHGNKFSEMNLELLVLNNNMLMGPIPKFKAANFTYDDNLFCQTEPGVECSQQVTSLLDFLANLNYPSFLISDWSGNKPCTSSTGPWFGLSCNSSEVSLINLPKHKLNGSLSPSLAKLESLLEIRLAGNNISGVVPSDFTKLKSLRLLDLSDNNIESPLPNFRDGVKVITIGNPSLNNQTGGSVSPVISGPSLENNSTHSSASYNQPVPSSHHRRFKTVAILVGVAVFAVVVSFIVYLFLCFFKKDKNSLDALSSIVVHPRDSSDPYNGIKIAVSSNNTGSLTEKSGTSSLTNLSGETKNSHLIEVGNHVISVQMLRKVTNDFASENELGRGGFGTVYKGELEDGTKIAVKRMENGTIGNKGVEEFQAEIDVLSKVRHRHLVSLLGHSIEGNERLLVYEYMPLGALSQHLFHWKKLDLKPLSWSQRLVIALDVARAMEYLHGLTRETFIHRDLKSSNILLGHDFRAKVSDFGLVKLAPDGEKSVVTKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLTALDESRSEEIRYLAEWFWRVKSNNEKLMAAIDPALEQNEESCESITIVAELAGHCTAREAYHRPDMSHAVNVLSALVEKWRPVSDEFNDLYSAVDGTRPLPQMLKIWKDAENNEFSYSSTSASLEDSKGSIALRPNGFADSFTSADAR 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02182 824 FunFam Leucine-rich repeat receptor-like kinase 202 329 - -
Vifa1g02182 824 MobiDBLite consensus disorder prediction 330 360 - -
Vifa1g02182 824 SMART serkin_6 473 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02182 824 ProSiteProfiles Leucine-rich repeat profile. 294 316 IPR001611 GO:0005515
Vifa1g02182 824 FunFam receptor protein kinase TMK1 433 550 - -
Vifa1g02182 824 FunFam receptor protein kinase TMK1 551 768 - -
Vifa1g02182 824 Gene3D Ribonuclease Inhibitor 201 330 IPR032675 -
Vifa1g02182 824 ProSitePatterns Protein kinases ATP-binding region signature. 479 501 IPR017441 GO:0005524
Vifa1g02182 824 CDD STKc_IRAK 479 749 - -
Vifa1g02182 824 Gene3D Phosphorylase Kinase; domain 1 435 550 - -
Vifa1g02182 824 SMART LRR_typ_2 268 291 IPR003591 -
Vifa1g02182 824 SMART LRR_typ_2 91 113 IPR003591 -
Vifa1g02182 824 SMART LRR_typ_2 121 148 IPR003591 -
Vifa1g02182 824 SMART LRR_typ_2 292 314 IPR003591 -
Vifa1g02182 824 Gene3D Transferase(Phosphotransferase) domain 1 551 769 - -
Vifa1g02182 824 Pfam Protein tyrosine and serine/threonine kinase 476 748 IPR001245 GO:0004672|GO:0006468
Vifa1g02182 824 ProSiteProfiles Protein kinase domain profile. 473 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02182 824 Pfam Leucine rich repeat N-terminal domain 201 243 IPR013210 -
Vifa1g02182 824 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Vifa1g02182 824 SUPERFAMILY L domain-like 51 309 - -
Vifa1g02182 824 SUPERFAMILY Protein kinase-like (PK-like) 452 749 IPR011009 -
Vifa1g02182 824 Gene3D Ribonuclease Inhibitor 119 197 IPR032675 -
Vifa1g02182 824 Gene3D Ribonuclease Inhibitor 25 118 IPR032675 -
Vifa1g02182 824 PANTHER OSJNBA0070M12.3 PROTEIN 10 119 - -
Vifa1g02182 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 598 610 IPR008271 GO:0004672|GO:0006468
Vifa1g02182 824 Pfam Leucine rich repeat 261 305 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02182 Vifa-Chr1 350114523 350117477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02182 323 744 Trihelix Transcription Factor Family AT1G68690 37.559 7.18e-72 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vifa1g02182 PK_Tyr_Ser-Thr 1.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02182 - - cam:101493565 1083.94