Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02173 ATGAAGACCAATCCCCTCTCGTCCACCATCTTTTCATCTCTCACCCTCGTTTTCCTCCTTTCCTCAATCCCCTCTTCCAATGCTCTCGCCTCCGGCACCACCCTCGCCGTCGTCGACTCCACCTCCACCGTCTGCGGCATCGTCTCAGCAAACCAATCCCGCAACATTGTCTGCTACCGCCACGGCCTTATTATCTCCGCCATACCCGACGTCTCCTTCTCCTCAATCTCCGGCGGGAAAAACTACTTCTGCGGCATTATCTCCGGTAACTACAGTATCCTCTGCTGGGACACTGTTTCATCAAACACAACGTTCCAGAGGAGGAGGCTTTACTACAATGGTACTGTTCTATACGAGAATCTCTCCGTCGGTGATTCCCATGTTTGTGCCACGGTTGTTAACCTCGGAACCGTGTCGTGTTGGAGAATCAATAAAGGTTTCGTTTTGCCATCTGGGTTTGATCGATTTTCGTCGATAACTTCTGGGTTTGGATTCTCTTGTGGAATTTTGAAGGGAAACGATTCTGGGTCGGTTCGTTGTTTTGGGAATGTTGGGAATGTGAATGGATCAATTGCTGAAAAGATAGAAAATGAGTTTATGAATGTTTCTATGGCGAGTCTTGTAGCTGGTGAGTCACATGTTTGTGGATTGGATTCAAAAGGGTTTTTAGTTTGTAGAGGAAGTAATAATTTTGGTCAAATTAATGTTCCTGATCAAATTAAGCCTTTGGAGTATTCTGATTTAGCGTTAGGAGCTGAACATAGCTGTGCTATTAGAAGATCTAATGGTTCCGTTGTTTGTTGGGGTGGTAGAGGATTGTTTTCTGTTAATGCGACAAAAAGTATTTCTTTTGAGGTTATTGTTTCTGGTTCTAATTTTACTTGTGGATTAACAACAAACAATTTTTCGGTTGTTTGTTGGGGTCCTGGTTGGTTTAATAATGGTTCCACTTCGGTTTTTAAACTTCCTTTGCCTCCTATTCTTCCTGGTGTTTGTGTTCAATCTTCTTGTAGTGAGTGTGGTATATATCCGCACTCTCAGTATTTGTGCTCTAGTTTTGGGAACATTTGTAAGGCGAAACCTTGTTGGCCTCAAATGGAGGTTCTGGCGCCGCCCGAGGGAGAATCAACGTTGCAGCCGAGGGTGCCAGTTTCGAGTTCCAAGACTTTGACTAAAGGTTTATTGGCATTTGTTATTCTTGGATCAATTGGAACACTTGCTGGTTTTTGCACTGTGGTTTATTGTTTGTGGACTGGTGTTTGTTTTGGCAAAAAGAAAGTTCACAGTTCGGTTCAACCGACGATAACTAGGGTTGGAAGTTTCAATTGTGTTGCATTTTCGAATTATAGTCCACCTTCGAGAGCGTCCACTATAAGGCGACAAAGTTCGAGGATAATGAAGCGTCAGAGAAGCGGAACTTCATCGACAAGGCAACCAGATAAGTCAGAGGAGTTCACTCTTGCTGAGCTTGTTTCAGCCACCAACAGTTTCTCACCTGAGAACAAAATTGGTGCTGGAAGCTATGGTGTGGTTTACAAAGGTAAACTCACTGACGGCCGCGAGGTAGCAATCAAAAGAGGCGAAACCAGTACAATAACAAGGGTGTTTCAAGAGAAAGAGAGTGCGTTCGAGTCTGAATTAGCCTTTTTGTCACGTCTGCATCACAAGCATTTAGTTAGGCTAGTCGGTTTCTGTGACGAGAAAGATGAAAGGCTATTGGTGTACGAGTTCATGAAGAATGGAGCATTATATGATCATTTGCACGACAAGAATAACGTCGAAAAGAGTAGTAGTTTATTGAATTCTTGGAAAATGAGGATCAAAATCGCGTTAGATGCTTCGCGTGGAATTGAGTATCTTCATAATTACGCAGTTCCATCAATAATTCACAGAGACATAAAGTCATCAAACATTCTCATTGATGCAAATTGGACAGCGAGAGTGTCTGATTTCGGATTATCATTAATGAGTCCTGATTCAGACCAGGACTACATACCAACAAAAGCGGCAGGAACGGTCGGATACATTGATCCTGAATATTACGGTCTAAATGTATTAACATCAAAGAGCGATGTATACGGTCTTGGAGTAGTTTTACTAGAACTATTAACAGGAAAAAGAGCTATATTCAAAAAGGACGAAAACGGAGGAACACCGGTGAGTATAGTAGATTTTGCAGTGCCTATAATAATGGAAGGAGAATTATCTAAAATTTTGGATCAAAGAGTTGAACCACCAGAGATGAATGAAAAAGAAGCAGTGGAATTGGTAGCATATACTGCAATACATTGTGTTCATTTGGAAGGAAAAGATAGACCAACAATGGCAGATATTGTAGCGAATTTGGAACGTGCTTTCACTCTTTGTGATAGTAGTAGTCATGGCAGCATTTCAAGTGATACAGTCTCTGTTGGATCTGACTGA 2424 0.422 MKTNPLSSTIFSSLTLVFLLSSIPSSNALASGTTLAVVDSTSTVCGIVSANQSRNIVCYRHGLIISAIPDVSFSSISGGKNYFCGIISGNYSILCWDTVSSNTTFQRRRLYYNGTVLYENLSVGDSHVCATVVNLGTVSCWRINKGFVLPSGFDRFSSITSGFGFSCGILKGNDSGSVRCFGNVGNVNGSIAEKIENEFMNVSMASLVAGESHVCGLDSKGFLVCRGSNNFGQINVPDQIKPLEYSDLALGAEHSCAIRRSNGSVVCWGGRGLFSVNATKSISFEVIVSGSNFTCGLTTNNFSVVCWGPGWFNNGSTSVFKLPLPPILPGVCVQSSCSECGIYPHSQYLCSSFGNICKAKPCWPQMEVLAPPEGESTLQPRVPVSSSKTLTKGLLAFVILGSIGTLAGFCTVVYCLWTGVCFGKKKVHSSVQPTITRVGSFNCVAFSNYSPPSRASTIRRQSSRIMKRQRSGTSSTRQPDKSEEFTLAELVSATNSFSPENKIGAGSYGVVYKGKLTDGREVAIKRGETSTITRVFQEKESAFESELAFLSRLHHKHLVRLVGFCDEKDERLLVYEFMKNGALYDHLHDKNNVEKSSSLLNSWKMRIKIALDASRGIEYLHNYAVPSIIHRDIKSSNILIDANWTARVSDFGLSLMSPDSDQDYIPTKAAGTVGYIDPEYYGLNVLTSKSDVYGLGVVLLELLTGKRAIFKKDENGGTPVSIVDFAVPIIMEGELSKILDQRVEPPEMNEKEAVELVAYTAIHCVHLEGKDRPTMADIVANLERAFTLCDSSSHGSISSDTVSVGSD 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02173 807 SUPERFAMILY RCC1/BLIP-II 64 269 IPR009091 -
Vifa1g02173 807 SUPERFAMILY Protein kinase-like (PK-like) 474 782 IPR011009 -
Vifa1g02173 807 SMART serkin_6 497 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02173 807 MobiDBLite consensus disorder prediction 451 481 - -
Vifa1g02173 807 ProSiteProfiles Protein kinase domain profile. 497 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02173 807 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 202 793 IPR044815 GO:0004674
Vifa1g02173 807 FunFam Serine/threonine-protein kinase-like protein CCR4 578 801 - -
Vifa1g02173 807 Gene3D - 147 342 IPR009091 -
Vifa1g02173 807 Gene3D Phosphorylase Kinase; domain 1 456 577 - -
Vifa1g02173 807 FunFam serine/threonine-protein kinase-like protein CCR1 466 577 - -
Vifa1g02173 807 MobiDBLite consensus disorder prediction 467 481 - -
Vifa1g02173 807 Gene3D Transferase(Phosphotransferase) domain 1 578 796 - -
Vifa1g02173 807 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Vifa1g02173 807 Pfam Protein kinase domain 499 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02173 807 ProSitePatterns Protein kinases ATP-binding region signature. 503 525 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02173 Vifa-Chr1 348484470 348486893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02173 6 807 Receptor kinase-like Gene Family AT3G55950 56.606 0.0 802
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vifa1g02173 Pkinase 5.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02173 - - gmx:100782916 1169.84