Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02171 ATGGGTGAAATTGAAATTCCTCAATTTTTCATTTGTCCCATTTCACTTCAAATCATGAAGGAACCAGTTACAACAATCACAGGCATAACATACAACAGAGAAAGCATCGAACACTGGTTAGTCACATCAAAAAACTGCACGTGTCCAATCACCAATCAGCCCTTGCCAAGAAGCTCAGAGTTCTTGACACCAAACCACACTCTTCAAAGATTAATCCAATCATGGCACTCAACAAATTCAGCATCCTCTAAAATGTCTATAGAAAAATCCAAACTTGAAAAACTTGTTAAGAAGCTTGATCATGAAGCAATACAAAAATTGCATGCTCTTGCTTTAGAAGATGAAGGAACCAGAACAGGCATGGTTGAAGCAGGAGTAGAAAAAGCTATTATTCAAAAAGTGATTATCAAAAGCTTTTTCAAGCAAGGTAAAACAGTATATCTTGAAGAAGCTTTGAGAATTCTACGTTTACTTTGGCCTTTAGCCATAACCAATGACAAGAACAACATAGTGGACGACAACTTTGACTTAGTCAACTCTTTGACTTTGATTTTGCAACTTCACATTGATAACAAAAACTTCAAGGTAACAAACGAAGCAATGCTTGTATTGAAACATGTTCTTGAGGTAAAAACTTCAAACTCTTTGTTGAATCTAAACGTTGAATTCTTTAGAGAAATAGTGAAAGTACTTAGAATTAGAAACAAAGAGCTTTCTAAACAAGCTATGAAATCTGCATTGCATGTGTTACTACAAACATGTCCTTTAGGTAGAAACCGAATGAAGATTGTGGAAGCTGAAGCTGTGACAGAACTCATTGATCTTGCACTTGAGAAGCAAGAGAAGAATCAAACTGAGCTTATATTTACGCTTCTTGCGGATTTGTGTTCGTGTGCTGATGGAAGAGAGCAGTTTGTGAGACATGCAGCAGGGATTGCAGTGGTTTCTAAGAGAACATTGAGCAAAAAGCTAGAGGTGTTCTTAGGGTTACACTCAAATGTATGGAATAATAATTCTCCTTGTATTCAAGTTTATTTGTTAACTAGACACCAAAGGTGA 1059 0.3626 MGEIEIPQFFICPISLQIMKEPVTTITGITYNRESIEHWLVTSKNCTCPITNQPLPRSSEFLTPNHTLQRLIQSWHSTNSASSKMSIEKSKLEKLVKKLDHEAIQKLHALALEDEGTRTGMVEAGVEKAIIQKVIIKSFFKQGKTVYLEEALRILRLLWPLAITNDKNNIVDDNFDLVNSLTLILQLHIDNKNFKVTNEAMLVLKHVLEVKTSNSLLNLNVEFFREIVKVLRIRNKELSKQAMKSALHVLLQTCPLGRNRMKIVEAEAVTELIDLALEKQEKNQTELIFTLLADLCSCADGREQFVRHAAGIAVVSKRTLSKKLEVFLGLHSNVWNNNSPCIQVYLLTRHQR 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02171 352 SUPERFAMILY ARM repeat 84 308 IPR016024 -
Vifa1g02171 352 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Vifa1g02171 352 SUPERFAMILY RING/U-box 4 80 - -
Vifa1g02171 352 PANTHER WDSAM1 PROTEIN 3 320 IPR045185 GO:0061630
Vifa1g02171 352 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Vifa1g02171 352 Gene3D - 62 339 IPR011989 -
Vifa1g02171 352 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Vifa1g02171 352 CDD RING-Ubox_PUB 7 58 IPR045210 -
Vifa1g02171 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 61 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02171 Vifa-Chr1 347675726 347676937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02171 3 320 U-box Gene Family AT2G35930 36.826 5.85e-58 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02171 - - gmx:100787419 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02171 1 347675726 347676937 Vifa1g02171 1 347675726 347676937 ECH
Vifa1g02171 1 347675726 347676937 Vifa6g00347 6 141831605 141833182 PCT