Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02168 ATGTCGGACGGTCATCTCTTCAACAATATCACCCTCGGTGGCCGCAGAGCCACTAATACAGGGAAGATAAAAATATATTCTGGGGGAATTTCTTGGAGCAGACATGATGGAAAAAAATCTATTGAAGTTGATAAAGCTGACTTAATGAGCGTGACATGGACAAAGGTTCCAAAGAGTAATCAACTTGGTGTTCAGAACAAAGATGGTTCGTTCCACAAATTCACTGGATTTCGTGATCAGGACGTTGTAAGTTTGACAAGTTTTTTCCAAAAGACATTTGGAGTAACTGTAAATGAGAAACAACTTTCTATTAGTGGGCGCAATTGGGGAGAAATTGATTTAAATGGTAATACACTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAGGTGCCTTTAGCAGATATCTCACAAACAAACTTTCAAGGGAAAAATGATGCGGTCTTGGAGTTTCATGTGGATGACACAACTGGAGCCAATGAGAAAGATTCATTGATGGAGATAAGTTTCCATATACCGAATTCCAACACCCAGTTCGTTGGTGATGAAAATCACCCCCCTAATCAGGTTTTCGTTGATAAAATAAAACGTATAGTTGACGTTGGGTTTGGTGGTGAAGATACTGTTGTTACGTTTGAGAGTATTGGAATCCTTACACCAAGAGGACGATATAGTGTCGAGTTACACCTGTCATTCTTGCGGCTTCAAGGACAAGCTAATGATTTCAAAATCCAGTATAGCAGTGTGGTTCGACTATTTTTACTTCCTAAGTCTAATCAGCCGCATACCTTCGTTGTTATTAGTCTTGACCCCCCTATTCGGAAAGGACAAACTTTGTACCCTCATATTGTGATACAGTTCGAAACTGATGATGTGGTTCAAAGTGAATTGGCTTTAAGTGAAGATCTCTATAATGCTAAATACAAAGACAAGTTAGAGCTGTCTTATAAGGGGCTCATCCATGAAGTGTTCACCACAATATTACGTGGCTTGTCTGGGGCCAAAGTTACCAAGCCTGGAAAGTTTAGGAGTTGTCAAGATGGTTATGCCGTAAAATCATCTCTGAAAGCTGAAGATGGAATTTTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTACCTAAACCTCCCACTCTTATTACTCATGAAGAGATTGACTATGTGGAATTTGAGCGACATGCTGCCGGGGGTTCAAATATGCATTATTTTGACCTTCTTATCAGACTTAAATCTGAGCAAGAGCATCTCTTCCGTAATATTCAGAGAAATGAGTACCACAATTTGTATGGTTTTATCAGTTCAAAGGGCTTGAAAATTATGAATTTAGGAGATGCCCAACAAACCACTGGTGTGGCTAAGGTTCTTGAGAGTGATGATGATGATGCTGTTGATCCACATCTTGAGCGCATCAGAAATGAAGCTGGTGAAAATGAAAGTGACGAGGAGGATGAAGATTTTGTTGCCGAAAAGGATGATGAAGGGTCTCCTACTGATGATTCTGGGGCAGATGATTCTGATGCTAGCCAAAGTGATGATGAGAAAGAGAAGCCTCCCAAAAAGGAGCCTAAGAAGGATCTGCCTTCTAGCTCTAAAGCATCTACTTCCAAGAGGAAATTAAAAGATGCCGATGAAGATGGAAAGAAGAAAAAACCAAGGAAGAAAAAGGATCCAAATGCACCCAAGAGGGCATTGTCTGGGTTCATGTTCTTTTCTCAAGTGGAAAGAGAGAATCTAAAGAAAACCAATCCTGGGATTTCATTTACGGATGTGGCAAGAGTACTTGGTGAGAGATGGAAAAAGATGTCAGGCGAGGAGAAGGAGCCATATGAGGCAAAAGCCCGTGTTGATAAAAAACGTTATCAGGATGAAATTAGTGGCTACAAGAATGCGCAAGCACAACCGATGAATATTGATTCAGGAAATGAGTCTGATAGTACCTGA 1938 0.4051 MSDGHLFNNITLGGRRATNTGKIKIYSGGISWSRHDGKKSIEVDKADLMSVTWTKVPKSNQLGVQNKDGSFHKFTGFRDQDVVSLTSFFQKTFGVTVNEKQLSISGRNWGEIDLNGNTLAFMVGSKQAFEVPLADISQTNFQGKNDAVLEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPNQVFVDKIKRIVDVGFGGEDTVVTFESIGILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTLYPHIVIQFETDDVVQSELALSEDLYNAKYKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLITHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYGFISSKGLKIMNLGDAQQTTGVAKVLESDDDDAVDPHLERIRNEAGENESDEEDEDFVAEKDDEGSPTDDSGADDSDASQSDDEKEKPPKKEPKKDLPSSSKASTSKRKLKDADEDGKKKKPRKKKDPNAPKRALSGFMFFSQVERENLKKTNPGISFTDVARVLGERWKKMSGEEKEPYEAKARVDKKRYQDEISGYKNAQAQPMNIDSGNESDST 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02168 645 SUPERFAMILY PH domain-like 206 440 - -
Vifa1g02168 645 Pfam Histone chaperone Rttp106-like 350 439 IPR013719 -
Vifa1g02168 645 Gene3D - 199 338 - -
Vifa1g02168 645 FunFam FACT complex subunit SSRP1 96 179 - -
Vifa1g02168 645 Gene3D High mobility group box domain 542 641 IPR036910 -
Vifa1g02168 645 CDD HMG-box_AtSSRP1 555 630 - -
Vifa1g02168 645 MobiDBLite consensus disorder prediction 469 564 - -
Vifa1g02168 645 PRINTS Structure-specific recognition protein signature 241 257 IPR000969 GO:0003677|GO:0005634
Vifa1g02168 645 PRINTS Structure-specific recognition protein signature 219 235 IPR000969 GO:0003677|GO:0005634
Vifa1g02168 645 PRINTS Structure-specific recognition protein signature 374 391 IPR000969 GO:0003677|GO:0005634
Vifa1g02168 645 PRINTS Structure-specific recognition protein signature 400 416 IPR000969 GO:0003677|GO:0005634
Vifa1g02168 645 PRINTS Structure-specific recognition protein signature 356 374 IPR000969 GO:0003677|GO:0005634
Vifa1g02168 645 PRINTS Structure-specific recognition protein signature 416 434 IPR000969 GO:0003677|GO:0005634
Vifa1g02168 645 PRINTS Structure-specific recognition protein signature 264 280 IPR000969 GO:0003677|GO:0005634
Vifa1g02168 645 PRINTS Structure-specific recognition protein signature 329 342 IPR000969 GO:0003677|GO:0005634
Vifa1g02168 645 SMART hmgende2 558 628 IPR009071 -
Vifa1g02168 645 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Vifa1g02168 645 MobiDBLite consensus disorder prediction 600 645 - -
Vifa1g02168 645 SMART Rtt106_2 348 441 IPR013719 -
Vifa1g02168 645 FunFam FACT complex subunit SSRP1 1 93 - -
Vifa1g02168 645 MobiDBLite consensus disorder prediction 476 505 - -
Vifa1g02168 645 SUPERFAMILY HMG-box 546 628 IPR036910 -
Vifa1g02168 645 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 612 - -
Vifa1g02168 645 Gene3D - 1 93 IPR011993 -
Vifa1g02168 645 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 559 627 IPR009071 -
Vifa1g02168 645 Pfam HMG (high mobility group) box 559 627 IPR009071 -
Vifa1g02168 645 Gene3D - 95 179 IPR038167 -
Vifa1g02168 645 MobiDBLite consensus disorder prediction 625 645 - -
Vifa1g02168 645 FunFam Fact complex subunit ssrp1 199 338 - -
Vifa1g02168 645 FunFam FACT complex subunit SSRP1 543 636 - -
Vifa1g02168 645 Pfam POB3-like N-terminal PH domain 7 98 IPR035417 -
Vifa1g02168 645 FunFam FACT complex subunit SSRP1 339 448 - -
Vifa1g02168 645 CDD PH2_SSRP1-like 342 441 - -
Vifa1g02168 645 MobiDBLite consensus disorder prediction 600 623 - -
Vifa1g02168 645 Gene3D - 339 449 IPR011993 -
Vifa1g02168 645 MobiDBLite consensus disorder prediction 506 550 - -
Vifa1g02168 645 CDD PH1_SSRP1-like 207 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02168 Vifa-Chr1 347191423 347196837 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02168 555 627 ARID Transcription Factor Family AT1G04880 39.726 5.66e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vifa1g02168 POB3_N 2e-20 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02168 K09272 - gmx:100805034 1049.65