Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02166 ATGGACGTTGATTCCTCGATGGTTCAAGCGGCCGATCACGATTCTGTTGTGCAGAAGCAAACTGCTTCTGCTTCGGCGCCGGTTGTAGTCAAAGAAGAGCAGCTTCCGGAACCGCCGTCGTCTGGCGGCGGATCTCCGGCTGAGATGCCGCAACAGCAGCAGCAAGGGGGTAATGATGTGCAGCAGAGTCCGGTGGTTGGGCCGAGGTTAGCGCCGAATTATACTGTGGTGGATGCGATTCTAGAGAAGAAGGAGGATGGACCGGGGCCAAGGTGTGGACACACGTTGACGGCGGTGGCGGCTGTTGGTGAGGAGGGGACGCCGGGGTATATTGGTCCGAGGCTGATTTTGTTTGGTGGTGCTACTGCTCTTGAAGGAAATTCAGCGGGTTCGGGGACTCCTTCGTCGGCTGGAAATGCTGGAATACGTTTAGCTGGTGCCACAGCTGATGTCCACTGTTATGATGTCTTGACTAATAAATGGTCTAGGCTAACTCCCTTTGGAGAACCTCCAACGCCAAGGGCTGCCCATGTAGCAACTGCCGTGGGGACCATGGTGGTAATTCAGGGTGGCATTGGTCCTGCTGGTTTGTCGGCAGAAGACCTTCATGTTCTTGATCTCACTCAACAATGGCCTCGATGGCATAGAGTGTCTGTTCAAGGCCCCGGACCAGGGTCACGTTATGGACATGTAATGGCTTTGGTGGGCCAGAGATATCTTATGGCAATTGGAGGCAATGATGGAAAGAGACCTTTGGCTGATGTATGGGCCTTGGACACAGCTGCCAAGCCATATGAATGGCGCAAGTTAGAGCCAGAAGGAGAGGGCCCACCTCCATGCATGTATGCAACTGCAAGTGCACGCTCTGATGGGCTTCTTCTGCTTTGTGGAGGAAGGGATGCCAATAGTGTTCCATTGGCTAGTGCATATGGACTTGCTAAGCATAGAGATGGTCGTTGGGAATGGGCAATTGCCCCTGGTGTCTCACCATCTCCAAGATATCAGCATGCAGCGGTATTTGTTAATGCAAGGCTGCATGTGTCTGGTGGGGCTCTAGGTGGAGGACGGATGGTTGAAGACTCATCAAGTGTTGCAGTATTGGACACTGCTGCTGGTGTTTGGTGTGATACAAAATCGGTTGTTACCACTCCAAGAACTGGTAGATACAGTGCTGATGCAGCTGGTGGAGATGCAGCAGTTGAGTTGACTCGACGTTGTAGGCATGCAGCTGCTGCTGTTGGTGACCTGATTTTTATTTATGGTGGTTTAAGAGGGGGAGTCTTGCTGGATGACCTACTTGTTGCCGAAGATCTTGCTGCTGCTGAAACAACATCTGCTGCTTCACATGCTGCTGCTGCAGCTGCATCTAATGTACAAGCAGGGCGCTTGCCTGGACGATATGGATTTGATGATAGGCCCAGGCAAACAATGACTGAAGTGGCTGCTGATGGTTCTGTTGTATTGGGAAATCCAGTTGCACCCCCAATGAATGGTGACATTTATACCGACATCAGCACTGAAAATGCTATACTTCAGGGATCTCGTAGAACTGCCAAAGGAGTTGAGTATCTGGTTGAAGCATCTGCTGCAGAAGCCGAAGCTATTAGTGCTGCATTGGCTGCTGCCAAGGCACGTCAAGAAAATGGAGAAGTGGAATTACCTGACAGAGACCGTGGGGCTGAGGCTACCCCTAGTGGGAAGCACACATCTTCCTTGATTAAGCCTGATTCTGTAGGGTCAAATAACAATGTTTCTGGTGGAGTTCGGCTGCATCATAGAGCTGTAGTTGTTGCTGCAGAGACTGGTGGAGCATTAGGTGGCATGGTTAGACAGCTTTCAATCGATCAATTTGAAAATGAAGGCAGGCGGGTCAGTTATGGTACTCCAGAAAATGCAACTGCTGCTAGAAAGTTATTAGATCGGCAGATGTCCATCAATAGTGTGCCAAAAAAGGTCATAGCACACCTCTTAAAGCCTCGAGGATGGAAACCACCCGTGCGCCGGCAATTTTTCTTAGATTGTAATGAAATTGCTGATCTTTGTGATGGTGCTGAGCGGATATTTTCAAGTGAACCAAGTGTCTTACAACTAAGTGCACCAATTAAAATTTTTGGCGATTTACATGGGCAGTTTGGGGATCTCATGCGCCTTTTTGACGAGTATGGTGCACCGTCGACTGCTGGTGACATTGCATATATCGATTATCTATTCCTAGGAGATTATGTTGATCGAGGACAGCACAGCTTGGAAACTATAACCCTTCTTCTTGCCCTGAAGGTTGAATATCCCAACAATGTACATTTAATACGTGGAAACCATGAAGCTGCAGATATTAATGCTCTTTTTGGTTTTCGAATTGAGTGCATCGAGAGGATGGGCGAGAGAGACGGAATTTGGACGTGGCATCGGATTAACCGGCTATTTAATTGGCTTCCTTTAGCTGCTTTAATCGAGAAGAAGATTATATGCATGCATGGAGGTATTGGTCGTTCAATAAATCATGTAGAACAAATTGAGAATATTCAGCGACCAATTCCAATGGAAGCGGGGTCAATTGTGCTTATGGATCTGTTATGGTCTGATCCTACAGAGAATGACAGTGTGGAAGGACTGCGGCCAAATGCTAGAGGTCCTGGACTAGTTACTTTTGGGCCTGATCGAGTGATGGAATTTTGCAACAACAATGATCTTCAGCTAATTGTCCGTGCACATGAATGTGTGATGGATGGGTTTGAGCGTTTTGCCCAGGGACATCTGATCACACTTTTCTCAGCTACAAATTATTGTGGTACTGCAAATAATGCAGGAGCAATATTAGTTTTGGGTAGAGACCTTGTTGTGGTTCCTAAACTGATTCATCCATTACCGCCCGCAATATCTTCACCAGAAACATCACCAGAACGGCATATTGAAGATACATGGATGCAGGAGTTGAATGCCAACAGACCACCAACACCAACTAGAGGCCGTCCCCCAGTTACCAACGACAGAGGTTCACTCGCTTGGATATAG 3012 0.4824 MDVDSSMVQAADHDSVVQKQTASASAPVVVKEEQLPEPPSSGGGSPAEMPQQQQQGGNDVQQSPVVGPRLAPNYTVVDAILEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAGSGTPSSAGNAGIRLAGATADVHCYDVLTNKWSRLTPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQWPRWHRVSVQGPGPGSRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDANSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTTPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDDLLVAEDLAAAETTSAASHAAAAAASNVQAGRLPGRYGFDDRPRQTMTEVAADGSVVLGNPVAPPMNGDIYTDISTENAILQGSRRTAKGVEYLVEASAAEAEAISAALAAAKARQENGEVELPDRDRGAEATPSGKHTSSLIKPDSVGSNNNVSGGVRLHHRAVVVAAETGGALGGMVRQLSIDQFENEGRRVSYGTPENATAARKLLDRQMSINSVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDGAERIFSSEPSVLQLSAPIKIFGDLHGQFGDLMRLFDEYGAPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWTWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENIQRPIPMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAISSPETSPERHIEDTWMQELNANRPPTPTRGRPPVTNDRGSLAWI 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02166 1003 SUPERFAMILY Metallo-dependent phosphatases 657 963 IPR029052 -
Vifa1g02166 1003 Gene3D - 636 974 IPR029052 -
Vifa1g02166 1003 Gene3D - 213 459 IPR015915 GO:0005515
Vifa1g02166 1003 MobiDBLite consensus disorder prediction 979 1003 - -
Vifa1g02166 1003 Gene3D - 72 212 IPR015915 GO:0005515
Vifa1g02166 1003 MobiDBLite consensus disorder prediction 564 585 - -
Vifa1g02166 1003 CDD MPP_Bsu1_C 652 954 IPR041758 -
Vifa1g02166 1003 FunFam Serine/threonine-protein phosphatase 70 267 - -
Vifa1g02166 1003 PRINTS Serine/threonine phosphatase family signature 806 832 IPR006186 GO:0016787
Vifa1g02166 1003 PRINTS Serine/threonine phosphatase family signature 735 762 IPR006186 GO:0016787
Vifa1g02166 1003 PRINTS Serine/threonine phosphatase family signature 896 916 IPR006186 GO:0016787
Vifa1g02166 1003 PRINTS Serine/threonine phosphatase family signature 918 934 IPR006186 GO:0016787
Vifa1g02166 1003 PRINTS Serine/threonine phosphatase family signature 768 792 IPR006186 GO:0016787
Vifa1g02166 1003 PRINTS Serine/threonine phosphatase family signature 700 727 IPR006186 GO:0016787
Vifa1g02166 1003 SUPERFAMILY Kelch motif 146 435 IPR015915 GO:0005515
Vifa1g02166 1003 SMART pp2a_7 672 956 IPR006186 GO:0016787
Vifa1g02166 1003 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 1 1003 - -
Vifa1g02166 1003 Pfam Kelch motif 332 378 IPR011498 GO:0005515
Vifa1g02166 1003 MobiDBLite consensus disorder prediction 1 68 - -
Vifa1g02166 1003 FunFam Serine/threonine-protein phosphatase 636 976 - -
Vifa1g02166 1003 MobiDBLite consensus disorder prediction 11 27 - -
Vifa1g02166 1003 MobiDBLite consensus disorder prediction 548 563 - -
Vifa1g02166 1003 PIRSF STPPP_BSU1 33 1003 IPR012391 GO:0004721|GO:0009742
Vifa1g02166 1003 ProSitePatterns Serine/threonine specific protein phosphatases signature. 769 774 IPR006186 GO:0016787
Vifa1g02166 1003 FunFam Serine/threonine-protein phosphatase 271 470 - -
Vifa1g02166 1003 MobiDBLite consensus disorder prediction 546 585 - -
Vifa1g02166 1003 MobiDBLite consensus disorder prediction 45 62 - -
Vifa1g02166 1003 Pfam Calcineurin-like phosphoesterase 700 907 IPR004843 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02166 Vifa-Chr1 347026931 347038642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02166 664 899 Calmodulin-binding Proteins AT5G63870 29.412 6.20e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02166 - - gmx:100790406 1770.36