Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02156 ATGGCAATTATACTCTTCTTCCTTATAATCTCCACTGTCATTATTATAATCTACCGGAGCACTTTCCGGCAAAGATACAACCTCCCACCGGGAAGTCTAGGACTACCCTTTATCGGAGAAACACTACAACTAATATCAGCTTACAAAACCGACAACCCAGAGCCTTTTATCGACAAGCGAATGAACCGGTACGGTTCAATCTTCACAACACATATATTCGGCGAACCGACAGTGTTTTCAGCTGACCCGGAAACGAACCGGTTTATTTTGATGAACGAAGGGAAGCTTTTTGAATGTAGTTACCCCGGTTCAATATCGAACCTTTTAGATCATCTTCTTCTTGATATTGATCGGCTTATTCGGCTCAACTTGGATTCTTGGTCCGACCGGGTTTTACTCATGGAGGAAGCCAAGAAGATAACGTTTGAGTTGACAGTGAAGCAGCTTATGAGTTTTGATCCAGGTGAATGGAGTGAGAGTCTTAGGAAAGAATATGTGCTTGTGATCGAAGGATTTTTCACACTTCCCTTACCAATACTTTCTAGTACCTACCGCAGAGCAATCAAGGCGAGAACAAAGGTGGCTGAGGCATTAACATTGATTGTGAGGCAGAGAAGAAAAGAAAGTGTAACGGGGGAGAAAAAGAATGACATGCTAGGTGCATTGTTGGCCTCCGGCGACCACTTTTCCGACGAGCAAATAGTCGATTTTATGTTGGCATTGCTCGTCGCCGGCTACGAAACCACCTCTACCATAATGACTTTCGCAGTCAAGTTTCTCACTGAAAATCCTCTAGCATTGGCACAACTCAAGGAAGAACATGATCAAATCATCGCAAAGAAGAGTTGTCGAGATGAACCATTGGAGTGGACAGATTATAAGTCAATGGCATTTACTCAATGTGTTGTGAATGAGACTTTAAGGATGGCAAATATAATTGGTGGGATATTTAGGAGAGCAATGACAGACATCAATATCAAAGGTTACACTATTCCAAAGGGATGGAAGGTCTTTGCATCCTTTCGTGCGGTACATTTAAATCCTGATCATTTCAAGGACGCCCGCACCTTCAATCCATGGAGATGGCAGAGAAAATCAGAAGCAACTAGTCCTGCAAATGTATATACACCGTTTGGAGGAGGACCGCGGCTGTGCCCTGGATACGAGCTAGCCAGAGTTGTGCTCTCGGTCTTTCTTCACCGCTTTGTCACTCGTTACAGTTGGTCTCCTGCAGAAGAAGATAAGTTGGTGTTTTTTCCAACCACTAGGACTCAGAAGAGGTATCCTATTATAGTGAAGCCTAGAGTGGAACCCAAATCATGTAATTAA 1329 0.4342 MAIILFFLIISTVIIIIYRSTFRQRYNLPPGSLGLPFIGETLQLISAYKTDNPEPFIDKRMNRYGSIFTTHIFGEPTVFSADPETNRFILMNEGKLFECSYPGSISNLLDHLLLDIDRLIRLNLDSWSDRVLLMEEAKKITFELTVKQLMSFDPGEWSESLRKEYVLVIEGFFTLPLPILSSTYRRAIKARTKVAEALTLIVRQRRKESVTGEKKNDMLGALLASGDHFSDEQIVDFMLALLVAGYETTSTIMTFAVKFLTENPLALAQLKEEHDQIIAKKSCRDEPLEWTDYKSMAFTQCVVNETLRMANIIGGIFRRAMTDINIKGYTIPKGWKVFASFRAVHLNPDHFKDARTFNPWRWQRKSEATSPANVYTPFGGGPRLCPGYELARVVLSVFLHRFVTRYSWSPAEEDKLVFFPTTRTQKRYPIIVKPRVEPKSCN 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02156 442 CDD CYP90-like 60 434 - -
Vifa1g02156 442 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 378 387 IPR017972 GO:0005506|GO:0016705
Vifa1g02156 442 PRINTS P450 superfamily signature 244 261 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g02156 442 PRINTS P450 superfamily signature 376 385 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g02156 442 PRINTS P450 superfamily signature 385 396 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g02156 442 PRINTS P450 superfamily signature 301 312 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g02156 442 Pfam Cytochrome P450 175 416 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g02156 442 SUPERFAMILY Cytochrome P450 22 435 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g02156 442 PRINTS E-class P450 group IV signature 369 385 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g02156 442 PRINTS E-class P450 group IV signature 345 363 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g02156 442 PRINTS E-class P450 group IV signature 385 403 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g02156 442 PRINTS E-class P450 group IV signature 296 312 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g02156 442 PRINTS E-class P450 group IV signature 55 78 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g02156 442 PANTHER CYTOCHROME P450 26 25 417 - -
Vifa1g02156 442 Gene3D Cytochrome P450 18 434 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02156 Vifa-Chr1 345925464 345929892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02156 110 435 Cytochrome P450 AT5G05690 79.205 0.0 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02156 K09588 - gmx:100781291 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02156 1 345925464 345929892 Vifa1g02156 1 345925464 345929892 ECH